Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139404880
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Entry
139404880 CDS
T10872
Name
(RefSeq) AF4/FMR2 family member 3-like
KO
K15195
AF4/FMR2 family member 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139404880
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
139404880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AFF4_CHD
AF-4
Motif
Other DBs
NCBI-GeneID:
139404880
NCBI-ProteinID:
XP_071003516
LinkDB
All DBs
Position
3:77636460..77676574
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AA seq
1443 aa
AA seq
DB search
MPTVLRGTGQLSIVCSLIRCASQVTGSERNGCSKDILGDMTHSWPSQQPSGGSQAQCFPY
NPKEAKQHTTQQTWENVQQLRMTQPHVAPHKSMLADDLKLSSDEEDADKDPEQSASWTGN
NSLSEQHTHTHGGRVRHSCSDSSGSDSSGSDSSSESEEESSSQCLRSPSPETHSDPGTPT
DAQSLGCTEETDHPPTTQWQLDKWLKKVRKKSSSWDSSNRDHTQRATEHSSPSPDPHRAP
SPATSWGTREDYSPGQSPVPSPHFNYSPRHSPRPSPRPSPGYSPCPSPCHSPRHSPILSP
VPSVCLSPCLSTRASRDPSPIPRHPPKSPSPSLTQSSSRHYPQVRSLHQESLRPLTRPSL
TSSPSHRPKIRIAPAPSFESKSKLRHSSSPQPPLQHNSRPKPKQSQSVPTPKNTAKAAPA
LSTEPSHRPRPSPNSSPRLHSQPRLKHNPNTTSQQLTTPGQRPKESSRLSHNSNSKPRPK
FGPSLTTSLSTSPSPTPRAKTLPPADPSKETSSRVGHSSKSSPKPHSRPISKAGSGPSSR
SSPSPIPKVKSRENPAPHPKPPQRNPQSREREREVDNQRETQAADRKADRQAEGRGRGNV
ERQGERPEEKQGERRLAEDKLLRRPWVQSSEEEEDVEERKRRREEREKEEKRRRRKEQQQ
RGEWQAVQPKQRPHTNSERHRNPIDPQRHGTKKKRRRKSEEEERESQPDPSLPPSPSSPT
PVIPPTDSSSSSSSSSESDSEPSLPPNVAKVPADSTSSQRPIPRRGHQGPGRPSDIRPGV
LYPTATSNQDHGPQSQAKQKLYTLVPFGRSEQAPSSHRGLRNLVVQLNLSLLSRVPDTTT
DTPASHLHPSSSSSKQKEAMRHLYTPETEGGDSRRKRKSENGIQHHRESKRSNSHTNGPS
AHTESTANRESKRSNSHTNGPSAHTESTANRESKRSNSHSNGPSAHTESTANRESKQSNS
AHTESTANRESKRSNSHTNGPSAHTESTANRESKRSNSHSNGPSANTESTANRESKRSKS
QTNGPSAHTESTANRESKRSNSHSNGPSAHTESTANRESKRSNSHSNGPSAHTESTANRE
SKRSNSHSNDPSAHTESTANRCLDPHTDARHNRFLEDYLDSKRPLSPLSPLSDTPDPTKP
PIKTQPPVQHYTNSEVPRTHAKMEVECVGVSGKPPHMCESWGPPLQRAGSQRGTVLNHEP
PHHAEYYMHEAKRMKHRADAMVDKLGKAVNYVDAALSFMECGKAMEEGPLEDKSPYTMYT
ETVELIRYAMRLKNHSGPGARQEDKQLAVLCFRCLALLYWQMFRLKKDQAMKYSKALLEY
FKSSPKVPTTPPIWSGSGKGTGGPPSSLSPSPSALPLGSSPSSLINIPLRIHQMAANHLN
ITNNVLYSYEYWELAESLVRDNNEFFNYLNTLSGPLTLHSSIAHAVQYTRQGLQWIRISA
SVG
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atgcctacagtcctccgcggcacgggacaactttccatcgtgtgttccctgattcgttgc
gcatctcaggtcacaggaagtgagcgtaacggctgttccaaagatattctaggggacatg
acccattcctggccatcccagcaaccctcaggagggagtcaggcccagtgcttcccctat
aaccctaaggaagcaaagcagcacacaactcagcaaacttgggagaatgtgcagcagctg
aggatgacccagcctcacgtggcgcctcacaaatccatgctcgctgatgacttgaagctc
agcagtgacgaggaggatgctgacaaggaccctgagcagtcagcctcctggactggtaac
aatagtctgtcggagcagcacacacacacacatggtgggagggtgagacattcatgctca
gactcttcaggctcagactcttcaggctcagactcctccagtgagtcggaggaggagagc
agtagccagtgccttcgtagccccagcccagaaacacactccgatcctgggacacccacc
gacgctcagtccctcggctgcaccgaggagacagatcacccccccaccactcagtggcag
ctggataagtggctgaagaaagtccgaaaaaaatcctcctcctgggattccagcaaccgt
gaccacacccagagagctacagagcacagctcgccctccccagacccccacagagccccg
tctccagccacatcctgggggaccagagaggactacagccccggccagagccctgttccc
agcccacacttcaactacagccccaggcatagccctcggcctagccctcggcctagccct
ggctacagcccctgtcccagtccttgccacagcccaagacatagccccatccttagcccg
gtccccagtgtctgtctgagcccctgcctcagcaccagagccagccgcgaccctagcccc
ataccccgacacccccctaagagtcctagtcccagccttactcagtctagctcccgtcac
tatcctcaggttcggagtcttcatcaggaaagcctcaggcctctcacgcggcctagctta
acatccagcccgagccatagacccaaaatcaggatcgcacctgctcccagctttgagtcc
aagagcaaactgaggcacagttcctctccccagcctccacttcagcacaactccaggcct
aaacccaaacagagccagtctgttcccactcccaagaacacagccaaggcagcccctgcg
ctgagcactgagccgagccacagacccagacctagtcccaactccagtcccaggcttcat
tctcagcctaggttgaaacacaaccccaacacaaccagccaacaactaacaacccctgga
caaaggcccaaggagagtagcagactcagccacaattccaactccaaacccaggcccaag
tttgggcctagtttgacaaccagcctcagtaccagtcccagtccaacacccagggccaag
accttacctcccgcagaccctagcaaagagaccagcagcagagttggtcacagttccaaa
tcgagtcccaagccacattctcggccgatctccaaagctggttctgggcctagctctaga
tccagccccagtcctatacccaaagtcaagtcccgggagaaccctgctccccacccaaag
cctccacagaggaatccccaatccagggagagagaacgggaggtggacaaccagagagag
acccaggcagcagacaggaaggcagacaggcaggcagagggaagggggcggggtaatgta
gagagacagggagagaggccagaggagaaacagggagagagaagactggcagaggataag
ttgctaagacgcccctgggtccagagttcagaggaggaagaggacgtagaggagagaaag
aggaggagggaggagagagagaaggaggagaagaggaggaggaggaaggagcagcagcag
agaggtgaatggcaggcggtccagcccaagcagagacctcacaccaacagcgagcgacac
cgcaatcccatcgatccacaacgccacgggaccaagaaaaagaggaggaggaagagtgag
gaggaagagagagagtctcagccggacccttcccttccgccgtcgccctcctcccccaca
ccggtcatccctcccacagattcctcttcttcatcatcttcctcatcagagtccgactcg
gagcccagtctgcctcccaacgtcgccaaagtcccagccgactccacgtccagccagcgt
cccatccccaggagagggcaccagggccctgggaggccttcagacatcaggccaggagtg
ctctaccccactgccacatccaaccaagaccacgggccgcagagccaggcaaagcagaaa
ctctacaccttggtcccgtttgggcgtagtgagcaagccccatcctcacatcgaggcctg
aggaatctggtggtgcagttaaacctctccctgctcagcagagtgcctgatactacgaca
gacaccccagcctctcacctacacccctcctcttcgtcttccaagcaaaaagaggccatg
agacacctgtacaccccagagacagagggaggagacagcaggaggaaacggaagtcagag
aatggaatccagcaccacagagagagtaagcggagtaactcccacaccaacggcccctca
gcccacacagagtctacagctaacagagagagtaagcggagtaactcccacaccaacggc
ccctcagcccacacagagtctacagctaacagagagagtaagcggagtaactcccactcc
aacggcccctcagcccacacagagtctacagctaacagagagagtaagcagagtaactca
gcccacacagagtctacagctaacagagaaagtaagcggagtaactcccacaccaacggc
ccctcagcccacacagagtctacagctaacagagagagtaagcggagtaactcccactcc
aacggcccctcagccaacacagagtctaccgctaacagagagagtaagcggagtaagtcc
caaaccaacggcccctcagcccacacagagtctacagctaacagagagagtaagcggagt
aactcccactccaacggcccctcagcccacacagagtctacagctaacagagagagtaag
cggagtaactcccactccaacggcccctcagcccacacagagtctacagctaacagagag
agtaagcggagtaactcccactccaacgacccctcagcccacacagagtctacagctaac
agatgtctagacccccacacagatgccagacacaacaggttcttggaggactacctagac
agtaagaggccactgtcccccctgtcccctctctctgacaccccggaccccactaagcct
cccatcaaaacacagcccccagtgcagcactacacaaacagtgaggtgcccaggacccat
gctaagatggaggtggagtgcgtaggtgtgtcagggaagcccccgcacatgtgtgaatcc
tggggacctcctttacaacgggcagggagccagagaggaactgtactcaaccatgaaccc
ccacaccatgctgagtactacatgcatgaggccaagagaatgaagcaccgtgcagatgcc
atggtggataagctggggaaggcagtgaactatgtggatgctgctctctccttcatggag
tgtggcaaagctatggaggagggaccactggaggacaagtcaccctataccatgtacaca
gagacggtagagctcatcaggtatgccatgaggctgaagaaccactctggtcctggggcc
agacaggaagacaaacagttggccgtactgtgtttccggtgccttgctctcctgtactgg
cagatgtttcgtctgaagaaggaccaagccatgaagtactccaaagctctactggagtac
tttaagagttctcccaaagtgcctactacaccccccatctggagcggctcaggaaagggc
acaggggggcctccctcctctctctcccccagcccctcagccctccccctgggcagctcc
ccctcttccctcatcaacattcccctgcgtatccaccagatggcagcaaaccacctgaac
atcaccaacaatgtcctatacagctatgagtactgggagctagcagaaagcctggtcaga
gacaacaatgagttctttaactacctgaatacactgtcagggccattgactctacacagt
agtattgctcatgcagtccagtacaccagacagggtctgcagtggatacgcatcagtgcc
agcgtgggctag
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