Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139405460
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Entry
139405460 CDS
T10872
Name
(RefSeq) semaphorin-5B-like
KO
K06841
semaphorin 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sema
TSP_1
TSP1_2
TSP1_spondin
PSI
TSP1_ADAMTS
TSP1_CFP_C
Motif
Other DBs
NCBI-GeneID:
139405460
NCBI-ProteinID:
XP_071003887
LinkDB
All DBs
Position
Unknown
AA seq
1121 aa
AA seq
DB search
MVGVVGPVTMVTSLWEVVSLPPVGLLLLLCLPLCLCQQPLVNFESPFPPLPECTRKVHPI
VPYKALSPWMSGFSRPGVKDFSQLTLDLTRNQLIVGARNHLFRLSLSNASLLQAVEWGPD
EDTKRSCQSKGKTEDECQNYIRVLLITGRRIFTCGTNAFTPVCTTRQIGNISRVMDTVNG
VARCPYDPRHNSTAMVTEKGELYAATVIDFSGRDPVIYRSLGNMPPLRTAQYNSKWLNDP
HFISVYEVGLFTYFFLRENAVEHDCGRTVFSRVARVCKNDVGGRFLLEDTWTTFMKARLN
CSRSGEIPFYYNELQSTFYLPEQDLIYGIFTTNVNSISASAVCAFNLSAITQAFNGPFRY
QENPRTSWLSTPNPIPNFQCDTLEERGPGENQTERSLQDAQRLFLMSDVVQPVSTDPLLY
QDNIRFSKLVVDIVQGRDTLYHVMYIGTEYGTILKALSTTNKSMRGCYLEEMRLLPEGES
EPIKSLQILHSDRSLFVGLSDRVLKIPLERCSSYKTERHCLDARDPYCGWDRKQKRCTTI
EDSSNMSQWSQNITECPVRNLTQDGGFSPWAPWQPCNHDDREGASTSCACRSRSCNSPVP
QCGGSNCKGPTIQVANCSRNGGWTPWSTWGQCSTSCGIGYEVRQRSCNNPSPRHGGRVCV
GQGRDERLCNEKSPCPLPVFWSSWGSWSQCSAECGGGVHSRVRSCEKGNTCPGCALEYKT
CNLEACPEVRRNTPWTPWMPVNVTQDGARQEQRTRYTCRALLPDPHQLQLGKKKVETRVC
PNDGTAACDTEALVEDLVRASGGGSSGRPLLRQPGGTRWSPWETWSTCSQECSKGFRTRK
RTCASAEGKSSPSACSGSPVEYQDCNSQPCPVKGTWSCWASWSHCSATCGGGHYQRTRTC
SNPAPANGGDICIGLHTEEALCNTHTCEGGRLPWSEWGECDEEGLQHRSRECGEREADPS
LCQGNATASRPCQPPKVPVVVPGQDNDQRCGAFSLFHLMATGALCFFAAVMLSVLVYAYC
QRLHKPSQESAVIHPTTPNHLSYKGNTTPKNEKYTPMEFKTLNKNNLLPDESCNFFPSSL
SPLPSLPQNNVYTTTYYPAPLGKYDHPFHPDSPCRNYMHHS
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atggtgggcgtggttggccccgtaaccatggtgacgtctctgtgggaggttgtgtccctt
cctcccgttggtctactgctgctcctctgcctgccactctgtctatgccagcagccattg
gtcaactttgagagcccgttcccgcccctaccggagtgtaccaggaaagttcatcccatc
gtcccatacaaagcattgagtccctggatgtcaggattctctcgtcccggagtgaaggac
ttttcccagctgacccttgacctgaccagaaaccagctgattgtgggagctagaaatcac
ctcttcagactgagtctcagtaatgcttctctcttacaggcagtagaatggggaccagat
gaagacaccaagcggtcctgtcagagcaaaggaaagacagaggatgaatgtcagaactac
atccgggtcctgctcatcaccgggaggcggatctttacctgtggaaccaacgcctttacc
cccgtctgcaccacccggcagataggaaacatcagtcgggtgatggacacggtgaacggg
gtggcgagatgcccctacgacccgcgtcacaactccactgccatggtaacagagaagggc
gaactctacgccgccactgtcatcgacttctcgggtcgtgaccccgtcatctaccgtagc
cttggtaacatgccgccgctgcgaacagcccagtacaactccaaatggctcaacgaccct
cactttatctcagtctacgaggtgggtctcttcacctatttcttcctgagagagaacgca
gttgaacatgactgcggtcgcaccgtgttctcccgggtcgcccgggtctgtaagaacgac
gtgggcggtcgcttcctattggaggacacttggactacgttcatgaaggcacggttgaac
tgctcgcggtcaggagagatccccttctactataacgagctacagagcaccttctatctg
cccgaacaggacctcatctacggtatcttcaccaccaacgtgaacagcatctctgcgtcg
gctgtgtgtgctttcaacctcagcgccatcacccaggctttcaacggaccgttccgttac
caggagaaccctcgtacaagctggctctccacccccaaccccatccccaacttccagtgt
gataccctggaggagcgaggtccaggggagaaccagacggagcgcagcctgcaggacgcc
cagcgtctcttcctcatgtctgacgtggtgcagcccgtctccaccgaccccctcctgtac
caggacaacatccgcttctccaagctggtggtggacatcgtgcagggccgagacaccctc
taccacgtcatgtacatcggcactgaatacggcaccatcctgaaggccctctccacgacc
aataagagcatgcgggggtgttacctggaagagatgaggctcctccccgagggcgaaagc
gagccaatcaagagccttcaaatcctccacagcgataggtcattgtttgtggggcttagc
gacagggtgctgaagatcccactggaaagatgctccagctacaaaactgaacggcactgc
ctggacgcccgagacccctactgtggctgggaccgtaagcagaagcgctgcaccaccatc
gaggacagttccaacatgagccagtggagccagaatatcactgagtgcccggtaaggaac
ctgacccaggacggtggcttcagcccctgggcgccatggcaaccctgtaaccatgacgac
agggagggagccagcaccagttgcgcgtgtcgctcacgctcttgtaacagtccagtccct
cagtgtggaggctccaactgcaagggccccaccatccaggtggccaactgttccagaaac
ggaggctggaccccctggtccacctggggtcagtgcagcaccagctgtggcatcgggtac
gaggtgcgccagcgctcctgcaacaacccctcaccccggcatggggggcgtgtctgtgtg
ggacaaggccgagacgagaggctgtgcaatgagaagagcccatgtcccctgcctgtgttc
tggtcgtcttggggctcctggtctcagtgcagtgcagagtgtggaggaggggtccattcc
cgggtcaggagctgtgagaaggggaacacctgcccaggatgtgctctggagtacaagacc
tgcaacctggaggcgtgtccggaggtccgtcgcaacaccccctggaccccctggatgccg
gtgaatgtgacccaggacggggcccgccaggagcagaggacccgctacacctgcagggcc
ctccttccagaccctcatcagctgcagctgggcaagaagaaggtggagacccgcgtctgc
cccaacgacggcaccgccgcctgtgacactgaagccctggttgaagacttggtcagggcc
agtggaggaggcagtagtggtcgacctttgctccgacaaccaggtggcaccaggtggtcg
ccgtgggagacatggtcgacctgctcccaggagtgttccaaaggcttccgcacgcgcaag
cgcacctgtgcctcagccgagggcaagagcagccccagtgcctgtagtggatccccagtg
gagtaccaggactgcaactcccagccctgcccagtgaaaggaacctggtcgtgctgggca
tcatggtctcactgctccgccacctgtggaggtgggcactaccagcgtacccgtacctgt
agcaaccctgcccctgccaacggaggtgacatctgcatcggcctgcacactgaagaggcc
ctgtgcaacacacacacctgtgaaggtggccggctgccgtggtcagagtggggggagtgt
gacgaggaggggctgcagcatcgcagcagggagtgtggggaacgggaggcagaccccagc
ctgtgtcagggcaatgccaccgcgagtaggccctgccagccccccaaggtgccagtcgtt
gtgcctggacaggataacgatcagcgctgtggggccttctctctgttccacctgatggcc
acgggagcgttgtgtttctttgcagcggtgatgctgtcggtcctggtctacgcctactgc
caacgactccacaagccctcccaggagtcagccgtcatccaccccaccacgcccaaccac
ctcagctataagggcaacacgacgccaaagaacgagaagtacacccccatggagttcaag
acgctgaacaagaacaaccttctcccggacgagagctgcaacttcttcccctcgtccctc
tcgcccctcccctccctcccccagaataacgtttacaccaccacctactacccagcaccc
ctgggcaaatacgaccaccccttccaccccgactcaccttgcaggaactatatgcaccac
agttga
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