Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139405503
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Entry
139405503 CDS
T10872
Name
(RefSeq) nuclear receptor ROR-alpha A-like isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139405503
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ocla03310
]
139405503
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
139405503
Nuclear receptors [BR:
ocla03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
139405503
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
139405503
NCBI-ProteinID:
XP_071003990
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All DBs
Position
1:complement(29493701..29753864)
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AA seq
526 aa
AA seq
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MESPPDPASDPGNSASEPVTPARETPVNLETLRKADHPAPVRRQTCSSTNRGGLTNKQGI
SVTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLI
DRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQAQRDHQQQPG
EAEPLTPTYGLSANGLTELHDDLSGYMDSHTPDGSKPDSAVSSFYLDIQPSPDQSGLDIN
GIKPEPICDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQ
MTWQAFLQEEMESYQTKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLK
AGSLEVVFVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSE
DEIALFSAFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTL
RALCSRHTEKLTAFKAIYPDIVRSHFPPLYKELFGSDFEQSMPIDG
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcaagcgacccgggcaacagcgcctccgagccggttacc
ccggccagggaaaccccggtaaacctggagacgctccgaaaagcggaccatccagcccct
gttcgaaggcagacctgttcaagcaccaacagaggtggactcacgaacaagcaaggtatt
tcagtaacaaagaagacacatacctctcaaatcgaaataattccctgcaagatctgtgga
gacaaatcatcaggcatccattacggtgtgataacatgcgaaggctgtaagggcttcttc
aggaggagtcaacagagcaatgcggcctactcatgcccccgtcagaagaactgcctgatc
gaccgcaccagccgcaaccgctgccagcactgccggctgcagaagtgtctggcagtgggc
atgtcacgggacgcggtgaagtttgggcgcatgtcgaagaagcagcgggacagcctgtat
gcggaggtgcagaaacaccggctgcagcaggcgcagcgtgaccaccagcagcagcccggc
gaggccgagccactcacacccacctacggcctctcggccaatggcctcacagagctccac
gatgacctcagtggctatatggacagccacacccccgacggcagcaagcccgactcagca
gtcagcagcttctacctggacatccagccctcccctgaccagtccggcctggacatcaat
ggcatcaagcctgagcccatctgcgacttcgcccccggctcaggcttcttcccctactgc
tcctttaccaacggagagacatcccccaccgtgtccatggctgagctagagcacctggcc
cagaacatctccaagtcccacatggagacgtgtcagtacctgagagaggagctgcagcag
atgacctggcaggccttcctgcaggaggagatggagagctaccagaccaagccccgggag
gtcatgtggcagctgtgtgctatcaaaatcacagaggccatccagtacgtggtggagttt
gccaagcgcatcgacggcttcatggagctgtgtcagaacgatcagatagtgcttctgaaa
gcaggctctttggaggttgtgtttgtcagaatgtgccgtgccttcgactctcaaaacaac
acagtctatttcgatggaaagtatgctgggcccgatgtgtttaagtcattaggctgtgac
gatttgatcagctccgtcttcgagtttgggaagaacttgtgttctatgcacctgtctgag
gatgagatcgccctgttctccgcgttcgtgttgatgtctgcagaccggtcctggctccag
gagaaggtaaaggtggagaaactccagcagaagatccagctggcgctgcagcatgtcctg
cagaagaaccaccgagaggatggcatactcaccaagttgatatgcaaagtgtcaacactg
cgagcgctgtgcagcaggcatacagagaagctgacggctttcaaagcaatatacccagac
attgtgcgttcccactttcccccgttatacaaggagctcttcggatcggactttgagcag
tccatgcccattgacgggtag
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