Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139405510
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Entry
139405510 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
139405510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139405510
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139405510
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
139405510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
ANCHR-like_BBOX
fn3
RING_XB3-XBAT31
zf-RING_UBOX
PRY
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
Ig_DSCAM-DSCAML_C
zf-RING_2
zf-RING_5
Pur_ac_phosph_N
Motif
Other DBs
NCBI-GeneID:
139405510
NCBI-ProteinID:
XP_071004004
LinkDB
All DBs
Position
3:82155864..82202742
Genome browser
AA seq
669 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILISHCSPNEPVQSISAFQCPTCR
YAITLNQRGLEGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERVAPDGTAMTSPSERVQ
CQFCEQDPPQDAVKTCVTCEVSYCDECLKATHPNKKPFTSHRLIEPMPDCHIRGLMCLEH
EDEKVNMYCVTDEQLICALCKLVGRHRDHQVAALSDRYEKLKQTLDSNLSNLIKRNNELE
TLMGKLIQICQHVEGNASRQENKLLEECDLLMDVVQQRRQIIATKINEGKAIRLRKLAQQ
IATCKQIIERSSSLITQADHTLREGDHARFLQTAKSICERVSMATASSQILIPEINLNDT
FDTFALDFTREKKMLEGLDYLTAPNPPIIREELCTASYDTITVHWTSDDEFCVVSYELQY
AIFTGQANVVSLCNSADSWMIVPNIKQNHYTVHGLQCGTKYIFMVKAINQAGSRSSVPGK
LKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETSSKKSHNQDRFTSQGSYGVTGNVYIDS
GRHYWEALIGGSTWFAVGVAYKSAPKHEWIGKNSASWVLSRCNNSWVVRHNSKEMPIEPS
PHLRRVGVLLDYDAGSLAFYDGAGSQHLYTFDITFAQPVCPVFNVWNKCLTVLTGLPIPD
HLEGTDCQD
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaaacactggagtcggagctgacctgcccaatctgtctggagctcttcgaggacccc
ttgctcttgccctgcgctcacagcctgtgtttcaactgtgcccaccgcatcctgatctcc
cactgcagccccaacgagcctgtgcagtccatcagcgccttccagtgcccaacctgtcgc
tatgccatcaccctcaaccagaggggcctagagggactgaagcgtaacgtcactttgcag
aacatcatcgaccgcttccagaaggcttccgtgagcgggcccaactcccccagcgagact
cgccgtgagcgggtcgccccggacggcacggccatgacctcccccagcgagagggtgcag
tgtcagttctgtgagcaagaccctccccaggatgccgtcaagacctgtgtcacctgtgag
gtgtcctactgcgacgaatgcttgaaggccacccaccccaataagaagcccttcaccagc
caccgtctgatcgagcccatgccggactgccacatcaggggactcatgtgtctggagcac
gaggacgagaaggtgaacatgtactgtgtcacagatgaacagttgatctgtgccttgtgc
aaactggtcggtcggcatcgggaccaccaagttgccgccctcagcgaccgctatgagaaa
ctcaagcaaaccttggactccaacctcagcaatctgattaagaggaacaacgagttggaa
actctgatgggcaagttgatccagatctgccaacatgtggaggggaatgcatcaagacaa
gagaacaagctcctggaagagtgtgacctcctgatggacgtggtacagcagagaagacag
atcatagccaccaagataaacgagggaaaggctatccgtctgcgaaagctagcccagcag
atcgccacctgcaagcagatcatcgagagatcgtcatccctcatcactcaggcagatcac
accctgagggagggagaccacgcccgcttcctgcagacagccaaaagcatctgcgagaga
gtgtccatggcgacagcatcctctcagatcctgataccagagatcaacctgaatgacacc
tttgatacgtttgcgttggactttacaagggaaaagaaaatgctggaaggcttggattac
ctcacagcaccaaatcccccaataatccgggaggaattatgtacagcatcgtatgacacc
atcactgttcactggacatcagatgacgagttctgcgtggtctcctatgagctgcagtat
gccatcttcacgggacaagccaatgtcgtcagtttgtgtaactcggctgacagctggatg
attgtgcccaacatcaagcagaaccactacaccgtgcatggactccagtgtggcaccaag
tacatcttcatggtcaaagccatcaaccaggcagggagtcgcagcagtgtgcctgggaag
ctcaagaccaacagtcagccgttcaagttggacccaaagtctgctcacaagaagctgaag
gtctcccacgacaacctgacggtggagcgagacgagacgtcgtccaagaagagccacaat
caggaccgcttcaccagccagggcagctacggcgtcactgggaatgtgtacatcgacagc
gggcgccactactgggaggccttgataggagggagcacatggtttgctgtgggcgttgct
tacaagtcagcaccgaaacacgagtggatcggcaagaactcggcctcgtgggtattatct
cgatgcaacaactcctgggtagtacgtcacaacagcaaggagatgcccatcgagccgtcc
ccccacctgcgtcgcgtgggggtgttgttggactacgacgccggttccctggccttctac
gatggcgccggctcacagcacctgtacacgttcgacatcacctttgctcagccagtgtgt
cccgtgttcaacgtgtggaacaagtgtctgactgttctcacggggctgcccatcccagac
cacctcgaggggacagactgccaggattaa
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