Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139405666
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Entry
139405666 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1-like
KO
K10602
E3 ubiquitin-protein ligase NHLRC1 [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
139405666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139405666
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139405666
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
139405666
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
RING_XB3-XBAT31
zf-C3HC4
zf-C3HC4_2
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
139405666
NCBI-ProteinID:
XP_071004186
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All DBs
Position
3:6089411..6090906
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AA seq
415 aa
AA seq
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MADVPVPPSSLRTEGILLREIHVNLLECKVCFEKYNPRQKERRPQNLSCGHVLCLECVRA
LSHPVLEKLECPFCRQLCDVDSTSHCQALTDLQDLLLSRSPRSPVPHRVRGGSGWVGGLG
SGALRLRSAFGGWGSLINPTGVAVFGSSGTLVVVHDGERRVVVFGPQGRRLHGFGRRGRG
HGEVCHPVDVAVTPSGYVVVTDAGDGAVKVFTSRGSYVLAVWDSFQMPWGVDVDSCGHIL
VTDIQAGTLSQVVVDFARGVTLMNRAVITDLQRPKAVACCRVTGNIALVETLGLTTTQPP
NGPRPTRLTIFNKDFNVLSQIDSFTLSLGASVWPCMSAVAFDRDGDVIVIDSQRGLIWSL
GKLQNGPVLTPLVSGDLVRPVGLVATAQNTLIVLDSGDHAVKMYSVHSDAILVQK
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgttcctgttcctccttcctcactgagaacagaggggatcctcttgagagag
atccacgtcaacctgctggagtgtaaagtctgcttcgagaagtataacccacggcagaag
gaacgccggcctcagaacctgtcctgcggccatgtactctgtctggaatgtgtccgggcg
ctctcccaccccgtcctcgagaagcttgagtgccctttctgccggcagctgtgtgacgtt
gacagcacctcccactgccaggcgctgacagacctccaggatcttctgctctcccgctcc
cccaggtcacctgtccctcatcgggtcagaggaggcagcggctgggtcggaggtctgggc
tctggagctctgcggcttcgctcagccttcgggggctgggggtccctgatcaaccccacg
ggggtggccgtgtttgggtcctctgggaccttggtggtggtgcacgatggagaaaggagg
gtggtggtattcgggcctcagggcaggcggctgcacgggttcgggcggaggggtcgcggc
cacggggaggtgtgtcacccggtggatgtggcggtgactcccagcgggtatgtggttgtg
acggatgccggtgacggtgcagtgaaagtgttcacctccagggggagttatgttctggcg
gtgtgggactccttccagatgccctggggggtggacgtggacagctgtggacatatcttg
gtcactgacatccaggccggcacgctctcccaggtcgtggtggactttgcccgtggcgtg
actctgatgaaccgagcggtcataaccgacctccagcggcccaaggcagtggcctgctgt
cgggtgacggggaacatcgccctggtggagacactggggctcaccaccacacaacctcca
aatggcccccggcctaccagactgacaatattcaacaaagactttaacgtgctctctcag
atagacagctttactctgagcctgggggcctccgtgtggccctgcatgtctgccgtggcc
tttgacagggacggggatgtgatcgtgatagactcccagcgtgggttgatttggagtttg
ggaaagctccagaacggcccggtcctaacccctctggtcagtggagacttggttcgcccg
gtggggctggtcgccacagcacagaacacgctgattgttttagacagtggagaccatgca
gtgaagatgtattcagttcactcggatgctattctagtccaaaaatga
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