Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139405862
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Entry
139405862 CDS
T10872
Name
(RefSeq) neural-cadherin-like
KO
K27892
neural-cadherin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Cadherin related
139405862
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Ortholog
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Gene cluster
GFIT
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NCBI-GeneID:
139405862
NCBI-ProteinID:
XP_071004397
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Position
3:26638046..26777968
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AA seq
2903 aa
AA seq
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MTGATNGTVALKTFLLVALVSFSTGNSKLPVYYGQIVENSHAGTMVDGVALPVGNNCPVS
ELDIALEGKDASDFRLVYLHGEQHLILKSTETLDREFIAVYDLMVVLSGCLNSAVVIKIE
VLDSNDNIPRFIKENERVKVDELTPIGSELVRFFAKDSDVGKNGRVTYYASPNCQHVYVV
PQTGQVMLVSSLIGIVNLTVSIYAQDNGDVALISKPVTLHLDVQRPAVSKIRRPRAVSEE
LFYTVTVSEDVKVGDMIFTVPDQKFEKKWFEVISEADSPVQIERDSGRLYLAHRLKSPAE
VMVKIQNLRGDEWYLCRLSLSVPTLADLQWGMFPQPYLGAVGPDAAPGSVVYRLTARQRD
GTIGNAHFLLLDGGEDSFEVDRSSGEVRTTGRPLTPSREYMLRVQAVDTQGRKGPPATVA
ILAGFRPPQFTNASYTLTVPENTPVGQTVAMVGAVSFQRKTLSYMLLVNPGNLFSVNQES
GAVSLTRTVDFESGHTLHTLQVRASEPDTGLSGVAEVVVHITDENDCTPEFLHSIYSRDN
IPEATAPGTSLLQVLARDCDTGLNSELSYFIQSADFAISSRGVVSPSQRLDYERPNHMYE
FVVVVVDNGTPPRTGTASIRFRMANTNDEAPIFSQAVYKTFLSEDAGPDTLVAIVHANDP
DGDGVSYAITGGNEDSNFQLDNQKGIIKLRRSPPPILRGPQYILNITATDDNAADGPYPL
SNSAQVIVGINDINNNKPVFEECHNYSVNTVVLENQPPGTSVLRVHALDADMGVNGEVKY
GIMHRDGTSSGFVINPDTGVISTTVSFDRERQREYSLSVTATDLAQEPLIGICQITILIT
DQNDNDPKFENSRYQYFLREDTPVGTSFLRAAAHDDDQGSNAAIAYSLSRQQPAYLHINP
STGWVYVNHPISQTSRISQQIVATDGGNRSSSVELTVIITNVHNQPPQWEQLEYWVTVSE
NIVRDAKIVTIKATSPLGDSRVTYNLEEGQVPETNMPVRFYIKPNRSDGSATILVAEPLD
YETTRFFTLRVRVQNVAAVPLASFTTVYVNVTDVNDNVPFFLSSTYEATVPEGAEIGTSV
VQVSATDLDSGLHGMINYVILKDDSGDSQYFSINSYTGVIHTRASFDREQKGSYLIEVQS
QDSSESARPGQQGQPNTDTAYVRILVTDVNDNAPAFAQSVYEVRVEEDKEVGFVLITVTA
NDEDEGANAKLRYQITSGNTMGTFDVEPEVGTIFVAQHLDYEMEQRYELRLVASDGKWEN
ESLVVVQVVNRNDEAPVFGQTEYHAAVTEELTELPVFVLEVSATDPDQEADQSALRYSLH
GQGAGSEFTIDERTGRIYAQRRLDREERPAWRFLVLATDEGGAGLTGFADVLLEVRDIND
NAPVFPCPAPDSSGCFVGHVPENSPADTSVMEMRATDLDDPKAGKNAILTYRIVQNVRNE
INLNLFSINPSTGTISTVLRSLDREAEDRYLVVVEARDGGGLSGTGTATIMVSDVNDHPP
VFTQRVYTAQVTEDLEINSEVLAVSASDGDQGENAVVTFSIVGGDEDRKFFVETDKANRR
GVVRLKKKMDFEKPHERTFNLTLKAEDADFFSLAYCLVQVEDSNDHAPVFFPQFYEAPAM
SEDVSVGTIVVQVTAADLDSGLNGRFSYSIAKESDPYGQFLVDQSGWVVVADSLDREMVS
QHRLMVLASDMGIPPLTGTAIVMVTVLDVNDNGPEFEVPYKPIVWENMAAPQAVRINDTS
LLLHAADRDSSPNGGPFSIRLLMLTSDATNFNLTDLRNGSAALSTLQTFDRERQKEYRLP
ILMIDSGSPPMSSTSTLTVVIGDRNDHAHSPGHTDFFVYSYQGVLPTTVLGQVQSPDLDD
WSEKVYRFKGKPPSGLFSLNHNSGQLIIREGAPVPVGSYSLEVRVSDKTWPDVTSTAEVV
VMELDEEAVQNAGSLRLSNITVEQFFSSAPGQESSFSRLGRLLSELLQTDRDNVHVFSVA
NGNRQGEREINVWFAAHGSPYYKAEKLHGNVMAHKAKLEAALGVSISQVGIDECPYTDCS
QSGGCSSDVTFSLTPTALSSGNTSLVSVSASSEARCGCRARESLHQACSSYPRNPCLNGG
TCQDSELGYRCKCPPMFDGPECQQTKHTFRGQGYAWFPPIRLCFQSHISLEFITESANGL
LLYNGPLGPAQAGEQEDYIALELRNGVPTLSISHGSGSLTLQLPARSTVTDRRWHRLDIV
SDGKAVQLILDQCSGAVVNEVEGLVVEVLETDQSGCKASGETPGNLRFLNVNQPLQLGGV
KVTSTHRRYKAFTGCFRNLVVDSKVYDLGIPGESLDSSPGCGLTDGVCVTASGPSCGVHG
TCLGEWGSFSCDCHPGYSGHKCDIALPEWSFVRDSMLRYQLRGGGSPRRTHIQLLLRTRS
STGTLLSMTSRDANEYIILEIVDGHLSVHANLGDSAHSLRLASQRVDGGQWVLASLHRHD
NLFTLRLEQGGGSREVRAWMGNRREIVVHPSSVLLGNGPTPGQSADFQGCLRDVRLNGHS
LPLDGQSTEFSTVLERRGVTSGCHSDACSAKPCRNPLYCVDLWRKHQCRCPGGQVTVTDE
TSGHHRCVPSPCGPSACRNRGTCHALTPDSWQCRCPEGFRGQRCEVGQMKAHRMAALSPG
SILVISMCLLVFFAVLVAVTVWNQKGSRSKFQKRGVYHIPAEHQSWEDIRENILNYNEEG
GGEQDQNAYDITELKRPLCSSLSQSSSCTTAPLIKSSQGSQEEVHPAGSACSSGTPYLHI
PHHHHRHHHHASNASYTNDSNDAHAISVGHCPMDFKSYVARIIWEADNDSQEFPPDSYHV
WSIEGAGSPVGSLSSLGSAISHDTAEEEEGAAFSFDRLSHWGDKFEALSEMYEQPALALT
YRDTLCYSQSQRSHSQDNLPHPF
NT seq
8712 nt
NT seq
+upstream
nt +downstream
nt
atgacgggagctacaaacggaacggtagccctgaagacatttttgcttgtcgcattggtt
tcattttcaacggggaattcaaagctgcctgtgtattatggacaaattgtggagaactcg
cacgctggaacaatggtggatggggtcgctttaccggttggaaacaactgtcctgtttcg
gaactggacattgctttggaagggaaggacgcatcagattttcgtttggtttaccttcac
ggagaacagcatcttattttgaaatccacagaaactttggacagagagtttattgcagtg
tacgatttgatggttgtgctttctggttgtttgaatagtgccgtggtgattaaaatagag
gtgcttgattcaaacgacaacataccccggttcatcaaggaaaacgaaagggtaaaagtt
gatgaattgacccctatcggttccgaattggtccgtttttttgcaaaggattccgacgtt
ggaaagaatggccgggtcacttattacgcatctccaaattgccaacatgtctacgtagtt
ccccaaaccgggcaggtaatgctggtcagttctctcattggtatcgtgaacctaacagtc
agtatttacgctcaagataatggagatgtcgcattgataagtaagccggtgacacttcac
cttgatgtgcagagacctgctgtctcgaagattaggaggccccgagcggtctctgaggag
ctgttctacacagtgaccgtctcagaggatgtcaaagtcggtgacatgatattcacggtg
cctgaccagaagtttgaaaagaagtggttcgaggtaatatcagaggcggactccccggtt
cagatcgagagggactcgggtcgtttgtatctcgcgcacagactgaagtcccccgcggag
gtcatggtcaaaatccaaaacctcagaggtgatgagtggtacctctgcaggctgagcctg
agtgtgcccaccctggcagacctgcagtggggcatgttcccccagccctacctgggcgca
gtgggacctgacgccgcaccaggctctgtggtctaccgcctcaccgcccggcaacgagat
ggcacaataggaaacgcccactttctgctactggacggcggcgaggattcgtttgaggtg
gaccgcagctctggggaggtcaggaccaccggccgacccctgacccccagcagggagtac
atgctgagggtgcaggcggtggacacgcagggcaggaagggtccccctgcaacagtggct
attctggcagggttccgccccccacagttcaccaacgcctcctacaccctgactgtccca
gagaacacgcccgtgggccaaactgtggcgatggtgggggctgtctccttccagaggaag
actctctcctacatgctgttggtgaaccctggcaacctgttcagtgtcaaccaggagagt
ggagctgtcagcctcacccggacagtggactttgagagtggacacacactccacacgctg
caagtcagggcctccgagccagacacaggcctcagcggtgtggcagaggtggtggttcac
atcacagatgagaatgactgcactccagaattcctccattccatttacagccgggataac
attcccgaagccaccgcgcctggaacatcactgctacaagttctagcgagggactgtgac
acagggctcaactcagagctctcctacttcatccagagtgccgactttgccatctcttcc
aggggcgtggtcagccccagccaacggttggactacgagcggcccaatcacatgtatgag
tttgtggtggtggtcgtggacaacgggactccaccccgcaccgggaccgcctccatccgg
ttcagaatggccaacaccaacgacgaggctcccatcttctctcaagctgtctataagacg
ttcttgtcggaggatgctggtcctgacactctggtggccattgtccacgccaatgaccct
gatggagacggggtctcttacgccatcactggcggcaacgaggacagtaactttcagctg
gacaaccagaagggcatcatcaaactgcgccggagcccccctcctatcctgcgtggcccc
cagtacatcctcaacattaccgccactgatgacaacgcggcagacggaccctatcccctc
agtaactccgcccaggtcatagtgggcatcaacgacatcaacaacaacaagcctgtcttt
gaagagtgccataactacagcgtcaacaccgttgtcctggagaaccagccccctgggaca
tctgtcctgcgcgtgcacgccctcgacgcggacatgggggtcaacggagaggtcaaatat
gggatcatgcaccgagatgggacatcatccggcttcgtcatcaaccctgacacaggtgtg
atcagcaccactgtgagttttgaccgcgagcgccagagagagtactccctgtctgtcacg
gcgacagacctggcccaggagcccctcatcggcatctgccagatcaccatcctcatcacc
gaccagaacgacaacgaccccaagtttgagaacagccgctaccagtacttcctgcgtgag
gacacgccggtggggactagcttcctgcgagcagcggcacacgatgatgaccaggggagt
aacgccgctatcgcctactctctgtcccgtcagcagccggcctacctgcacatcaacccc
agcacaggctgggtgtacgtcaaccaccccatctcacagacgtcgaggatcagccagcag
atcgtggccacagacgggggcaacaggagcagctctgtggagctgacggtcatcatcacc
aacgtgcacaaccagcctccccagtgggagcagctagagtactgggtcactgtgtccgag
aacatcgttcgcgacgccaagatagtgactatcaaggccacctcgccgctgggtgactct
agagtgacctataaccttgaagagggtcaggtgccggagaccaacatgcctgtccgtttc
tacatcaaacccaacaggtctgatggctctgccaccatactggtggctgaacctctggac
tatgagaccacgcgcttcttcacactaagggtcagagtgcagaacgtagctgctgttcca
ctggcctcttttactaccgtctacgtcaatgttacagatgtaaacgacaacgttcccttc
ttcctgtcctccacctacgaggctaccgttccagagggggcagagatcggaacatcggtg
gtgcaggtttctgctacggacctcgattcaggcctccatggaatgataaactatgtgatc
ttgaaagatgacagtggagactctcagtacttcagtattaactcctacactggggtcata
cacacccgggcctcgtttgaccgtgagcagaaaggttcctacctcatagaggtccagtct
caggacagctccgagtcagccaggcctggacagcagggacagcccaacaccgacacggcc
tacgtacggatccttgtgacagacgtcaacgacaacgctccggctttcgcccaatcggtg
tacgaggttagagtggaggaagacaaggaggtgggcttcgtcctcatcaccgtgacggcc
aatgatgaagatgaaggtgccaacgccaagctccgctaccagatcacctctggcaacacc
atgggcacctttgacgtggagccagaggtggggaccatctttgtggcccagcatttagac
tacgagatggagcagcgctacgagctgagactggtggcctccgacgggaaatgggagaac
gagagcctagtggtggtccaggtggtgaaccgcaacgacgaggcgcccgtcttcggccag
acagagtaccatgccgctgtcacagaggagctgaccgagctgcccgtcttcgtgctggag
gtttcagccaccgacccagaccaggaggcagaccagagcgccctgcgatactcactccac
ggccagggagccggcagcgagttcaccatcgatgagcgtacgggccgcatctacgcccaa
cgccgtttggaccgtgaggagcgcccagcctggcgtttcctggtcctggccaccgatgaa
ggaggagcgggactcactggctttgctgacgtccttttggaagttcgtgacatcaatgac
aacgcaccagtcttcccatgcccggcgccagactcttcaggctgctttgttggccacgtg
cctgagaactctcccgccgacacctcagtgatggagatgagggccacggatttagatgac
cccaaggccgggaagaacgccatactgacctaccgcatcgtacaaaacgttcgcaacgag
atcaacctcaatctgttctccatcaacccttcaactggaaccatcagtacagttctacgg
tctctggaccgtgaggcggaggaccgctatctggttgtggttgaggccagggatggtggg
ggcttgtccgggactggaacggctactatcatggtatcagatgtcaatgaccatccacca
gtcttcacccagagggtctacactgcccaggtgacagaggacctagagataaacagcgag
gtactggcagtctccgccagcgatggcgaccagggtgagaacgcagtggtcactttcagc
atcgtcggaggcgacgaggacaggaagttctttgtggagacggacaaggcgaaccggcgt
ggtgtggtgcggctgaagaagaagatggactttgaaaagccccacgagagaacgttcaac
ttgactttgaaggcagaagacgcagacttcttcagcctggcatactgcctggttcaggtg
gaggattccaacgaccacgcacccgtcttcttcccacagttctatgaggctcctgccatg
tctgaggacgtgtctgttggcaccattgtggttcaagtcaccgctgccgatctggactca
ggactaaatggccgcttctcctacagcattgccaaagagtctgacccctacgggcagttc
ctggtggaccagtcaggctgggtggtggtggctgactctctggaccgggaaatggtatcc
cagcacagactcatggtcctggcctccgacatgggcatcccgccactcaccggcaccgcc
atcgtcatggttactgtactggacgtcaatgacaacgggccagagtttgaggtgccctac
aagcccattgtgtgggaaaacatggctgccccccaggcggtgagaataaacgatacatcc
ctgcttctccacgcagccgaccgtgactcctcacccaatggtggaccattttccatccgt
ctcctgatgttaacctccgatgctaccaatttcaacctgactgacctgcgcaacggtagc
gctgcactgagtaccctgcaaacctttgaccgtgaacgccagaaggagtaccgccttccc
attcttatgattgacagcggctctcccccaatgagctcaaccagcacactgacggttgtc
atcggcgacaggaatgaccacgcccactctccgggccacacagacttctttgtgtacagc
taccagggtgttcttcccacaacagtgcttggacaggttcaatcccctgaccttgatgac
tggagcgaaaaggtttacagattcaaaggcaaaccccccagcgggttgttcagtctaaac
cacaactcaggccagttgattatcagagagggggcccctgtgccggtgggttcctacagc
ctcgaggtgcgtgtctccgacaagacctggcccgatgtgacctccactgcagaggtcgtc
gtcatggagctggacgaggaggcggtccagaacgctggctctttgcgcctgtccaacatc
acagtggaacagttcttcagtagtgcaccgggtcaggagagttctttctcccgcctgggt
cgtctcctctccgagcttctccagaccgaccgggacaacgtccacgtcttctctgtcgcc
aatggcaaccgccaaggtgagagagagatcaacgtgtggttcgccgcccatggctcgccg
tactacaaggccgagaaactccacggcaatgtgatggcgcataaagctaagttggaagca
gcgctcggtgtgtctatctcccaggtgggtatagacgagtgtccctacacagactgcagt
cagtcgggcggctgcagcagtgacgtcaccttcagcctcacccccacagccctcagctcc
gggaacacctctctggtgtctgtctccgcctcctctgaggcacgctgcggctgcagggcc
agagagagcctgcaccaggcctgctcctcctacccccgcaacccctgcctcaacggaggc
acctgtcaggacagcgagttgggatacaggtgcaagtgtccacccatgtttgacgggcct
gagtgccagcagaccaagcacaccttccgcggccagggttacgcctggttccctcccatc
aggctttgctttcagagccacatctcattagagttcataaccgagtcagccaatgggctg
ctgctctacaacggccctctaggccccgcccaggccggagagcaggaggactacatcgct
ctggaattgaggaatggcgttccgaccctcagcatcagccatggatcgggatcactgacg
ctgcagctcccagcgagatccaccgtcacggaccgccgatggcaccgcctggacatcgtc
agtgacggaaaggcagttcaactgatcctagaccagtgttcgggggcagtggtgaatgag
gtagagggtctagtggtggaggtgctagagacagatcagtctggctgcaaggcttctgga
gagacccctggcaacctgaggttcttgaatgtgaaccagcctctccagctgggtggggtg
aaggtgacctccacacacagacgctacaaagctttcactggctgcttcaggaacctggtg
gtcgatagcaaggtgtatgacctgggaattccgggggagagcttggatagttccccaggc
tgtggcctgacagacggggtgtgtgtgacagcaagtggaccttcctgtggcgtccacggg
acctgcctaggcgagtggggctccttcagctgtgactgtcaccccgggtacagcgggcac
aagtgtgacatagctctgccagagtggtccttcgtcagggacagtatgctacgctaccag
ctgagggggggaggtagcccccgtcgtacacacatccagctcctgctccgcacgcgctcc
tccactggcaccctgctctccatgacatcccgcgatgccaacgagtacatcatcctggag
atcgtagacggccacctgtcggtgcatgccaacctgggcgacagtgcccactccctccgc
ctggccagccagcgagtcgacgggggccagtgggtcctcgccagcttgcatcgtcacgac
aacctcttcacgctgcgcctggagcagggtggtggctcgcgggaggtcagggcctggatg
gggaacaggcgggagattgtagtgcacccctccagtgtgctgctgggaaatggaccaacc
cctggacaatctgctgacttccagggctgcttgcgcgatgtgaggctgaacggccactcc
ctccctctggatggtcagagtacagagttcagtacagtgttggagcggaggggggtgacc
tccggctgtcactcagacgcctgcagtgccaagccctgccgtaaccccctctactgtgtg
gacctgtggaggaaacaccagtgcaggtgtccaggtgggcaggtgacggtgacagacgaa
acatcaggccaccaccgctgtgtaccctccccgtgtggaccctcagcctgccgtaacagg
ggcacctgccacgccctgacccccgacagttggcagtgccgttgccccgaggggttcaga
ggtcagcggtgtgaagtgggccagatgaaagcccaccgtatggccgccctcagcccgggc
tccatcctggtcatcagcatgtgtctgctcgtcttcttcgctgtgctggtagctgtgaca
gtgtggaaccagaagggcagtcgtagtaagttccagaagaggggcgtgtaccacatccct
gcagaacaccagagctgggaggacatcagagagaatatcctcaactacaacgaggaggga
ggaggagagcaggaccagaatgcctatgatatcacagagctgaagaggcccctgtgttcc
agcctgtcccagtcctcatcctgcactaccgcccctctcatcaagtcctcacagggctcc
caggaggaggtgcaccctgctggctcagcctgcagctcagggaccccctacctccacatc
ccccaccaccaccaccgccatcatcaccacgctagcaatgctagctatactaatgatagt
aatgatgctcatgctatctccgtgggccactgccccatggacttcaagagctacgtggcg
cgcatcatctgggaggccgacaacgacagtcaggagttcccgccggacagctatcatgtc
tggagcatcgagggcgccgggtccccggtcggtagcctcagctcgctgggttctgctatc
tcccacgatacagcagaggaagaggagggagcagccttcagcttcgaccggctatcccac
tggggggacaagtttgaggctctaagtgaaatgtacgagcagccggcgctggcgctgaca
tacagggacactttgtgttacagccagagtcagaggagccatagtcaggacaacctgcca
caccctttttag
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