Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139405866
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Entry
139405866 CDS
T10872
Name
(RefSeq) semaphorin-3D-like
KO
K06840
semaphorin 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Sema
PSI
Ig_3
Ig_6
ig
DUF702
I-set
V-set
Motif
Other DBs
NCBI-GeneID:
139405866
NCBI-ProteinID:
XP_071004407
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Position
1:31818380..31888093
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AA seq
803 aa
AA seq
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MKTGGTECEPVERLSWGFTGGQGRIRLSLAHPGLLLLGMVLLVLLPSGESVKQSVPRVQL
SYKELVQSGSVSVFLSPTDGLHSHSVLLDEERGRLLLGTRDSVYLLDPDHLSRAPRKISW
PAPRDRVEMCKLAGKSAHLECGNFVRVLHNYNHTHLYACGTGAFHPICAFIEISGRREEG
VFQLLSGTVESGRLKCPYDPRQPFTSVLTDQFLYAGTASDFLGKDTTFTRSLGPPPDQHY
IRTEISEDYWINEARFISAHPVSDTYNPDDDKIYFFFRESSRDRSDKSVLSRVARVCKND
VGGLRSLTNKWTTFLKARLVCSIPGPEGVDTHFDELQDIFMLPSRDEKNPVVYGIFTTSS
SVFRGSAVCVYSMADIRAVFNGPYAHKEGPDHRWVEYEGRIPYPRPGTCPSKTYDPRIKT
TKDFSDEVVSFIRFHPLMFRSVYPLTGRPVFTRVRVDYALTQIVVDRVMAEDGQYEIMFL
GTDAGSVLKVVSITQENWSTEEVILEELQVFQTPTPILSMEISSKQQQLYVGSGAGLAQV
SLSRCHLYGQVCAECCLARDPYCAWDGHTCSRYIPASKRRARRQDIKHGDPSSQCWDTDD
TLRGGRVEERIMFGVENNSTFLECLPKSQQATIRWFIHRPGAEHREEVRPDDRVVLTDRG
FLIRSLHPADAGVYVCVAQEHTHFTHTLLRLTLRLIPYGHLDGRTKPSEDPSVEVRPGAE
SRQRYKDYLRVMSSPIGSLEDYCDSLWLEKRPANRRGGRGQGAGKWKHIQELKKSRNRRH
HGERGAERDKEKDGERVAQWRSG
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgaagactggagggactgagtgtgagcctgttgagagactgtcctggggctttactgga
ggtcaagggaggattaggctgtctctagcccacccagggctgctgcttctggggatggta
ctgctggtcctcctgccttctggagaaagtgtcaaacagagtgtccccagagtccaactc
agctacaaagagctggtccagagtggtagtgtatcagtgttcctgagtcctactgatggt
ctccattcccactctgtgttgttggatgaggagagaggcaggctgctgctgggaaccaga
gactcagtttacctactggaccctgaccacctcagtagagcccccaggaagatcagctgg
ccagcccccagagacagagttgagatgtgtaaactggccggcaagagtgctcatttggag
tgtggcaattttgtgcgtgtgctccacaactataaccacacccatctgtacgcctgtggg
acaggagccttccaccccatttgtgccttcattgagatctcaggacgcagagaggagggt
gtgttccagttgttgtccggtacagtggagtctgggaggctgaaatgtccttacgacccc
aggcaacctttcacctctgtactcacagatcaattcctgtatgcgggcacagcatcagac
ttcctgggtaaagacacaactttcacccgctccctgggcccgccccctgaccagcactat
atacgcactgagatctcagaggactactggatcaatgaggccaggtttatatcagctcac
cctgtgtccgacacctacaaccctgacgatgacaagatctacttcttcttccgagagtca
tcacgggacaggagcgataagagtgtcctgtcccgcgtagcacgcgtctgcaagaatgac
gtgggagggttgaggagtctgaccaataagtggacgacgttcctcaaagccagactggtg
tgttccatccctggacccgaaggagtggacacacactttgacgagctccaggacatattc
atgcttccctctagagatgagaagaaccctgtagtgtatggaatcttcaccacctccagc
tctgtgttccgtggctcggcggtgtgtgtgtacagcatggctgacatacgagctgtgttc
aacggaccctacgctcacaaggagggacctgaccatcgctgggtagaatatgaggggaga
ataccttaccctcgccctggaacgtgtcccagtaagacatatgaccccaggataaaaacc
accaaggacttctcagacgaggtggtcagcttcatccgcttccacccactcatgttccgc
tctgtctaccccctgaccggtcggcccgtgttcacacgtgtacgtgtcgactacgcactg
acacagatagtggtggaccgcgtcatggctgaggatggacagtatgaaatcatgtttctg
ggtacagatgctgggtctgtgctgaaggttgtgagcatcactcaggagaactggtccact
gaggaggtgattttggaggaactccaggtgttccagactcccactccaatcctgagtatg
gagatctcttctaaacagcaacagctatacgttggttcgggggcggggctagcccaggtg
tcactgagcagatgtcacctgtatggtcaggtgtgtgcagagtgctgcctcgccagagac
ccctactgtgcctgggacggacacacctgctcacggtacatccctgcatccaagaggaga
gctaggagacaagacattaaacatggagacccatccagccagtgttgggacacagatgac
actctgcgtggaggcagggtggaagagaggataatgtttggggtggagaataactcaacc
ttcctggagtgtctccccaaatcacaacaggccaccatacgctggttcatacacagacct
ggagctgaacacagagaggaggtgaggccagatgacagagtggtccttacagaccgtggt
tttctcatccgctctctccatcctgccgacgctggcgtgtatgtgtgtgtggcacaggaa
cacactcacttcacacacactttgctccgccttacacttcgtctcattccctacgggcat
ctggatgggcggaccaagcccagcgaggaccccagcgtcgaagttcgccccggggctgag
tctcgtcagcgctataaggattatctgcgtgtgatgagttctcccattggctcgctggag
gactactgtgattcgctgtggctggaaaagaggccggccaataggagaggggggagaggg
caaggggcaggaaaatggaaacacatccaggagctgaagaagagcaggaacagacgacac
catggagagaggggtgcagagagggataaagagaaggatggcgagagggtagcgcagtgg
aggagtggatga
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