Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139406150
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Entry
139406150 CDS
T10872
Name
(RefSeq) transcription factor Sox-1a-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139406150
Transcription factors [BR:
ocla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
139406150
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
139406150
NCBI-ProteinID:
XP_071004736
LinkDB
All DBs
Position
3:complement(77287136..77288161)
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AA seq
341 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTNSGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMTEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGAGGGGMGLGVGVGSSGVGQRLESPGCHGGSASSGYTHMNGWANGAYSGQV
AAAAAAAAMMQEAQLVYSQHPGSGHHHHSHHHHHPHNPQPMHRYDMSALQYSPISNSQGY
MSASPSGYGGITYTQHQSSGVSSSAVMSTLGSLVKSEPSVSPPVSTHSRGPCPGDLREMI
SMYLPTGEPGDPSVQSRLHAMPQHYQSATAAVNGTVPLTHI
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacctccattcccctggaccccaaacgaacacaaat
tcggggcagacgggaccgaacagcgggtccaaagcgaatcaggaccgggtgaagcgtcca
atgaacgcgttcatggtgtggtcccgtgggcagcggagaaagatggcccaagagaacccc
aaaatgcacaactccgagatcagcaagcggctgggcgcggagtggaaggtgatgacggaa
gcggagaagagacccttcatcgatgaagcgaagcggttacgagccatgcacatgaaggag
cacccggattacaagtacagaccaagacggaagaccaagaccctgctgaaaaaggacaaa
tactctctggctggtggcctgctctctggggctggcggtggtggaatgggtctgggggtc
ggggtgggttcatccggggtcggccagaggttagagagccccgggtgccacgggggctcc
gccagctcaggctacacgcacatgaacggctgggcgaacggtgcgtactcggggcaagtg
gctgcagcagctgcggccgcggcgatgatgcaggaggcgcagctagtttacagccagcac
ccgggcagcgggcaccaccaccactcacaccaccaccaccacccgcacaacccccagccc
atgcaccgctacgacatgtcggcgctccagtacagccccatctcgaactctcagggctac
atgagcgcctctccgtccggctacggcgggatcacctacacgcagcaccagagctctggc
gtctcctcctccgctgtcatgagcacgttagggtcgctggtgaagtcagagccgagcgta
agccctcccgttagcactcactccaggggcccttgccccggagacttgagagagatgata
agcatgtatttaccgaccggagagcccggggacccgtcggtgcaaagtagactccacgca
atgccgcagcattaccagagtgcgacggctgcggtgaacggaacggttccgttaacacat
atatag
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