Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139406288
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Entry
139406288 CDS
T10872
Name
(RefSeq) C-myc promoter-binding protein
KO
K20163
DENN domain-containing protein 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139406288
Membrane trafficking [BR:
ocla04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
139406288
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
dDENN
uDENN
PPR_2
PPR_3
PPR_long
DUF2464
PPR
Motif
Other DBs
NCBI-GeneID:
139406288
NCBI-ProteinID:
XP_071004846
LinkDB
All DBs
Position
4:complement(1961429..2059262)
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AA seq
2077 aa
AA seq
DB search
MMEETGPRIADYFVVAGLTDSSKPLEEELQLDDVPGRSPRSAPGGRPLAPITDVAVVICS
LGEAVPQGYTCLESTPSGLSAELNGASLRGPQIYLCYKRGRDKPPLTDLGVLYEWKEKLK
PGCHIVQTTPSGRPANISSSSSQRIYITYRRSPQSQPHTSLAVTDVCIIIPGKGETPPHT
FCKVDKNLNSSMWGSSVYLCYKKSLAKTNTIAYNAGLLCRYPEEDDESFPLPESVPLFCL
PMGASIEFWPAHTKHSLPVFSTFVLTGASGDKVYGAAIQFYEPYPEDQLSDRQRSLLGLP
STCSSSEGTKSVHANKSICLLSHWPFFDSFRNFLTFLYRYSISGPHALPIEKHISHFMHK
VPFPSSQRPRILLQLSPHDSLMLSQPVSSPLPLSGGRLSTLLLNLGPKNATTLLVLAVTE
HKILVHSLRPAVLTSVTEALVSMIFPFHWPCPYIPLCPLALADVLSAPCPFIVGVDSRYF
DLYVPPPDVCCVDLDTNNILHKEEKRALTWKILPQKACKHLLNTLGRLYQQLTEGGQVSG
EDGQMEPTAIDPDLASGGKSLHTLEMQIQEAFLRFMAAILKGYRSYLLPITQAPSERTTD
ASSLFDLQGFLKSRDRSHQKFYSQMIKTQMFIRFIEECSFVSDKDASLAFFDECVDKIYS
NGSKIQMDSDGPEDTRLIELDESHRSEHTVYINPPELRLLAQGEEHPLCYSYSGFPVLSR
DLLELQDGPRPSSASLTQRHTSPASPAAIFRRSKQEIRSAQRMAKTHASVPQMWSKCLLR
HCYGLWFICLPAYASACHSKVRALRMAYDILRKMQDKKLQAPDEVCYRVLMQLCGQYSQP
VLAVRVLFEMKKAGVHPNAITYGYYNKAVLESTWPSTGSRGGYFLWAKLRNVVLGVGRFK
QTVQNHNQNQTQIRDTQLSDYSDLDTVSHGSEDSTNDSVERVSIDTDFTKMDSSDDGSST
GGQSDQGYDSLSKEEERMVGRDSDRTPLAQEKSERESCPLTRQDHTTSPGDSKTPCGTRP
KNRRLRPNSLDLTGGQGTLRTITLNFTSTTMQVRGPAPKRPPPPNCKPGKAEASQAVPTQ
NQKRLDGGEGEEVEGSKDRQTPAKEVERRSVNISVGDTERPVTHSVSGDGAVTQSVSGDG
DGVVTHSVSGDGAVTHSVSGDGVVTHSVSGDGVVTHSVSGDGVVTHSVSGDGVVTHSVSG
DGAVTHSVSGDGVVTHSVSGDGAVTHSVSGDGAVTHSVSGDGAVTHSVSGDGDGVVTHSV
SGDGAVTHSVSGDGAVTHSVSGDGAVTHSVSGDGVVTHSVSGDGVVTHSVSGDGVVTHSV
SGDGDGVVTHSVSGDGVVTHSVSGDGVVTHSVSGDGAVTHSVSGDGVVTHSVSGDGDGPA
DCSVSKQNSVRNSSETVGGAVKRTSIVETGFDPLSIIAAEMETEGNGDSSSTSTARRDLA
EEIEMYMKVLSPLSSRTASMDLQNPSSPLLHATSTPSEHSSRRPRPLSLTHSPCTSPRPP
PPLLRANSHLPLSRPKERLRPSSLVSPSSPTLSLDMFKSSFLSAGKGVAEKASRLYSRLS
SQTSLSQDVNCDQISVSSMTSVDPECTSLLEEGSVLDPEGFTSSYASPQHDSIACLRRSP
ARGRLVSQSPTSPCKVFRHNSFSSGLAPPSRGPQTPDSSPDASRFYLRHHYTTEVLMSSC
CRCQTCDCLVYDEEIMAGWTADDSNLNTTCPFCGSSFLPFLTVHIRDLRHRTSDESHQPL
GEDTAASANPETAAGALTPQSTTAPAAEQQDTEGVAGCPQDPVPGTTSDPISAPSPTSAP
PPTSPPPPASPPSPASTTTRSSPVSSSPTPTPSPSPPAPVTVPYLSPLVLWKELESLLGN
EGDQVISSPSIVDQHPIVFWNLVWCYRRLELPSHLPGLILTSQHCSQGHVPQVPAQSVSS
EDSKHVLVRILWDNPSLHQDSVQALYMLWHAHFSLPSASGTVYEEGQPQDHLFSSEVLQV
AVRNIQKGDVYQPMSQILQLLGPELGFNRQRSLYRDLLFLALTALGKSNINIDAFDREYK
VAYDRLSPSQVKLTHNCDRPPGAGVMECRRMFGKPIL
NT seq
6234 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggagacaggtcctcgcatagcagactactttgtggtagcagggctcactgac
tcctccaagcccttagaggaggaactgcagctggacgatgttcctggtcgctctccccgc
tcggcccctggtggccggcccctggcccccatcacagacgtagctgtggttatatgctca
ctgggggaagcggttcctcagggttacacctgcttagagtccaccccgtctggtctgtct
gcagagctgaacggagccagtctcagagggcctcagatctacctctgctacaagagaggc
cgagataagcctcctctcactgacctgggggttctgtatgagtggaaggagaagctgaag
cctggctgtcacatcgtccaaaccactccctctggtcgtcctgccaacatcagtagctcc
tcctcccagcgcatctacatcacctatcgccgctccccgcagagccagcctcacacgtca
ttggctgtcacagatgtctgcatcatcatcccgggcaaaggggagacgccccctcacacc
ttctgcaaggtggacaagaacctcaacagtagtatgtggggatcctcggtgtacctgtgt
tacaagaagtcactggctaaaaccaacacaatcgcatacaacgcaggtctgttgtgtagg
tacccagaggaggacgatgagtcttttcccctgccggagtctgttcctctgttctgtctg
cccatgggagctagcattgagttctggccagctcacaccaaacactccctgcctgtcttc
tctacttttgtactgactggggcctctggagacaaggtgtatggagctgccatccagttc
tatgagccgtacccggaggaccagctgagtgacagacagcgttctctgctggggctaccg
agcacatgcagtagcagcgaggggacaaagagcgttcacgctaacaagagtatctgtttg
ctgtcacactggccgttctttgactcattcaggaacttcctgacgtttctctacagatac
tccatctctggaccacacgctctgcccatagagaagcacatctcccacttcatgcacaaa
gtcccgttcccctcgtcacagagaccacgcatcctgctacagctgtctccacatgatagt
ctgatgctgagccagcctgtctcctcccctctgcctctcagtggtggtcgtctctccact
ctgctccttaacctgggccctaagaacgcgaccactctgctggtgctggccgtaacagaa
cacaagatcctggtccactctctcagaccggccgtactgaccagtgtgacggaggccctg
gtgtcgatgatcttccccttccactggccgtgcccctacatccctctgtgccctctggcc
ctggcagatgttctctctgccccttgccccttcatcgtgggcgtcgactcacgttacttt
gacctctacgtgcctccgcccgacgtctgctgtgtcgacctggacaccaacaacatattg
cataaggaggagaagagggccctaacatggaagatactaccacagaaagcctgcaaacat
ctcctcaataccctgggtagactgtaccaacagctgactgaaggtggccaagtcagcggc
gaggacggtcagatggagcccactgcgattgacccagacctggcgagcggagggaagagc
ctccacacgctagagatgcagatccaggaagccttccttaggttcatggcggccatattg
aaagggtaccgctcttacctcctccccatcacgcaggccccctccgaaaggaccacggac
gcaagctcgctgttcgacttgcaagggttcttgaagagccgggatcgttcccaccagaag
ttctactcccagatgatcaagacccagatgtttatccggttcatcgaggaatgttccttt
gtcagcgataaagacgccagtctggccttcttcgacgagtgtgttgataagatttacagc
aatggaagcaagattcagatggacagtgatggaccagaagacaccaggttgatagagctg
gacgagtcccatcgcagtgaacacacagtctacatcaaccctcctgaactaagactgttg
gctcagggagaggagcacccactctgctatagctactcagggtttccggtgctgagtcgt
gatttgttggagctccaggatggacctcgcccctcctcagccagcctgacacagagacac
accagtccagccagccctgctgccatctttaggcgctccaaacaggagattcgctcggcc
cagcggatggctaaaacccacgcctccgtaccccagatgtggtctaagtgtctgctgcgt
cactgttacggcctgtggttcatatgtctgccagcctacgccagcgcatgccactccaag
gtgcgggcactacgcatggcctacgacatcctgaggaagatgcaggacaagaagctacag
gcacctgatgaggtgtgttaccgggtgttaatgcagctatgtggacagtacagccagcca
gtcctggcggtcagagttctgtttgagatgaagaaggctggagttcatcccaacgccatc
acctacggttactacaacaaggcggtgttggagagcacgtggccgtccacaggaagtaga
ggaggctacttcctgtgggccaagctgaggaacgtggtcctgggggtaggacggttcaaa
cagacggtccagaaccacaaccagaaccaaacccagattagagacacacagctatcagac
tacagtgatctggacacagtcagtcatggcagtgaagacagtactaacgactcagttgag
cgggtctcaatcgatacagacttcactaagatggactccagtgatgatggatcaagcaca
gggggccaatcagaccaaggctatgactctctatctaaggaggaggagaggatggtggga
agggacagcgacagaacaccactagcgcaggagaagtcagagagggagtcttgtcctctg
actagacaggaccacaccaccagccctggtgactccaaaactccctgtggtaccagacca
aagaaccggaggctgaggcccaactccctggacctgaccggaggacaggggactctcagg
accatcacactcaacttcacctccaccaccatgcaggtccgaggccctgctccaaaacgc
cccccgcctccgaactgcaaacctgggaaggctgaggccagtcaggcggtgcctacccag
aaccagaagagattggatgggggagagggggaggaagtagaaggcagtaaggacagacag
acacctgccaaagaggtggaaaggaggagtgtgaacatcagtgttggagacactgaaagg
cctgtaacccacagtgttagtggagacggggctgtaacccagagtgttagtggagatgga
gatggggttgtaacccacagtgttagtggagatggggctgtaacccacagtgttagtgga
gatggggttgtaacccacagtgttagtggagatggggttgtaacccacagtgttagtgga
gatggggttgtaacccacagtgttagtggagatggggttgtaacccacagtgttagtgga
gatggggctgtaacccacagtgttagtggagatggggttgtaacccacagtgttagtgga
gatggggctgtaacccacagtgttagtggagatggggcagtaacccacagtgttagtgga
gatggggcagtaacccacagtgttagtggagatggggacggggttgtaacccacagtgtt
agtggagatggggctgtaacccacagtgttagtggagatggggctgtaacccacagtgtt
agtggagatggggcagtaacccacagtgttagtggagatggggttgtaacccacagtgtt
agtggagatggggttgtaacccacagtgttagtggagatggggttgtaacccacagtgtt
agtggagatggggacggggttgtaacccacagtgttagtggagatggggttgtaacccac
agtgttagtggagatggggttgtaacccacagtgttagtggagatggggctgtaacccac
agtgttagtggagatggggttgtaacccacagtgttagtggagatggagacgggcctgca
gattgcagtgtctccaaacagaacagtgtaagaaacagcagtgaaaccgtgggcggagcc
gtgaagaggacaagtatcgttgagactggcttcgaccctctgtccattatagcagctgag
atggagacagagggtaatggggacagtagcagtacctccacagcccgccgggacctggca
gaagagatagagatgtacatgaaggttctgagccctctgagcagcaggaccgccagcatg
gaccttcagaacccatccagcccgctactccacgccacctccaccccatctgaacactcc
tcccgccgacctcggcccctcagcctgacccactccccctgtacctccccccgaccacct
cctcccttgcttcgtgccaactcacacctccccctctccaggcccaaagaacgtctccgt
ccctcctccctggtctccccctcctccccaactctcagtctggacatgtttaagagcagc
ttcctgtcagcagggaagggggtggctgagaaggccagcaggctctactcccgcctgtca
tcacagacatcactctcacaggatgtgaactgcgaccagatcagcgtgtcatcaatgacc
tcagtggacccagaatgcacctctctgttggaggagggctctgtcctggaccctgaaggt
ttcacctcctcctacgcctcgccccagcacgacagcatcgcgtgcctgaggaggagccca
gccaggggacgcctcgtctctcagagccccacctcgccctgcaaggtgttccgccacaac
tccttctctagtggtttggctcctccatctagaggtccccagactccagactcttctcct
gatgcctcccgcttctacctccgtcaccactacactactgaggtgttgatgtctagctgc
tgtcgctgtcagacatgtgactgtctggtgtatgatgaagagatcatggcaggatggacg
gctgatgactccaacctcaacaccacctgtcccttctgtggctcttccttcctgcccttc
cttactgtacacatcagggacctgagacacaggaccagtgacgagagtcaccaaccttta
ggagaggacacggctgcctcagccaaccctgagactgcagctggagcactgacaccccag
tcaaccacagctccagcagcagagcaacaggacactgagggtgtagctgggtgtccacag
gaccctgtcccaggcacaacttcagatccaatctcagccccatctccaacctcagcccca
cctccaacctctcccccacctccagcctctcccccatcccctgcctcaactacaactcgt
agttccccagtgagtagttctccaaccccaaccccatccccatctcccccagccccggtg
acggttccctacctgagtcccttggttctgtggaaagagctagagtctctgctgggtaat
gagggggaccaggtgatcagttctcccagcatcgtggaccagcaccctatcgtattctgg
aacctggtgtggtgctaccgcagactggaactcccctctcatctgcccggtctcatactg
acctcccagcactgcagccagggacacgtaccgcaggtcccagcccagagcgtgtcttca
gaggacagtaaacatgtcctggttcgcatcctgtgggacaacccgtcactccaccaggac
tctgtccaggccctatacatgctctggcacgcacacttctctctcccctcagccagtgga
acggtgtatgaggagggccagccccaggaccatctcttctcctctgaggtcctacaggtt
gcagtgaggaacatccagaagggggatgtctaccagcccatgagtcagatcctacagctg
ctgggaccagagctgggcttcaacagacagaggagcctgtacagagatctcctcttcctg
gcgttgaccgctctggggaagagcaacatcaatattgatgcgtttgatcgtgagtacaag
gttgcttacgaccgcctcagccccagccaagtgaagctgacacacaactgtgaccggccc
ccgggagcaggagtcatggaatgtagaaggatgttcgggaaacccattctgtga
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