Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139406480
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Entry
139406480 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase rfwd3.S-like
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139406480
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139406480
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
139406480
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
zf-RING_2
zf-RING_UBOX
zf-C3HC4
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
zf-RING_5
zf-rbx1
zf-C3HC4_3
EIF3I
zf-C3HC4_2
Beta-prop_WDR3_1st
zf-RING_11
Beta-prop_WDR3_2nd
zf-RING_Vps41
Beta-prop_WDR75_1st
WD40
zf-C3HC4_4
CFAP43_N
zf-ANAPC11
Rtf2
WD40_WDHD1_1st
WD40_2
Beta-prop_RIG_2nd
Beta-prop_EML
WD40_Prp19
Zn_ribbon_TiaS
Beta-prop_WDR36-Utp21_1st
Beta-prop_ACSF4
Beta-prop_WDR36-Utp21_2nd
NBCH_WD40
DUF6779
Motif
Other DBs
NCBI-GeneID:
139406480
NCBI-ProteinID:
XP_071005209
LinkDB
All DBs
Position
4:complement(14599260..14616191)
Genome browser
AA seq
715 aa
AA seq
DB search
MEAMEVDLQLGVPRREPEPDDMAGNVEPPIIIPDSGSETEVEDEADAAPLDPPRLPTTWA
FSQNRIRVEGQVGPRIRMEGHIGHRVTTAAVRRQRRARPGVRALYPTQTSPSASRFLDFL
LRVPAANPDSGNTTESSESEDEADPTGPVDPHNPDEPAVPSSPGMNPPVAATPLQGLNPS
DSNATTEAARTETGNQVNPESVTAPVATSGAALRSSQGDEGEGETCSICFEPWTTSGEHR
LATLRCGHLFGYTCIGRWVKGQGQGAKCPQCNKKAKRSDIVLLYARKLRALDNTEQENMK
RSLEQEQSMRRNAELESAQCRLQLQVMTDECGKLRKQIQELKTLMAQPGCRPSKNSGVPL
SGLSQRQDSTQGGHYVFSKAVLLSQAGGCRVLSYCEPLSCLLASHPSPHTTLVPGYGVKK
VSTVNLKACQYVPIHVKQIRGLAFNRQADSLLLSAALDNTIKLTSLMTNTVVQTYNTGKP
VWSCCWCLDNNNYVYAGLSNGSVLVYDTRDTSTHVQELQPLRSRCPVASLSYVPRASSSS
FPCGGLIAGSLEGGCFWEQVDGTTYRPHILPLETGGCTDIQVEPESRHCLVTYRPGRSNP
SLRCVLMELNRTLQQDAAQEPLCSCYPVQTFSAGSSCKVLTKNAVFRSPAGEGSTLVCAG
DESTNSTMVWDAGSGSLIQKLPADLPVLDICPFEVNQGSYLASLTEKMLKIYKWE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgatggaggtggacttgcagctgggagtccccaggagggaaccagaaccagat
gatatggcaggcaatgtagagccccctatcatcatccctgactctggcagcgaaactgag
gttgaggacgaggcagacgcggctcccctagacccaccacggctcccgaccacctgggcg
ttcagtcagaaccgaatcagagtggagggtcaagttgggcccaggattagaatggagggt
catattgggcacagggtcactacagcagcagtccggaggcagcggagagccaggccaggc
gtcagggcgctctaccccacccagacctctccctctgctagccgcttcctagatttcctg
ctgcgagtccctgcagccaaccctgactctggcaataccacagagtcgagcgagtcggag
gatgaggcagaccccacagggccagtagaccctcacaaccctgacgagcctgctgttccc
tccagccctggaatgaaccctcctgtggcagccacgccactgcaaggcctaaatccttca
gattctaatgcaaccacagaggctgcgaggacagagactggaaatcaagtgaatcctgag
agtgtaacagccccagtggccaccagtggtgcggctcttcggtcgtcccaaggtgatgag
ggggagggggagacctgctctatctgctttgagccctggaccacgtcaggggagcaccga
ctggccaccctgcgctgcggacatctcttcggctacacctgcattggccgctgggtgaag
ggccagggccagggagccaagtgtccccagtgcaacaagaaggccaagcgctctgatatc
gtcctcctgtatgcacgcaagctgagggctttggacaacacagagcaagagaatatgaag
aggtcattggagcaggagcagtcaatgcgtaggaatgctgaactagagtcagcccagtgc
cggctacaactgcaggtgatgacagacgaatgtgggaaactacgcaagcagatacaggag
ttgaagacgctgatggctcagcctggctgtaggccctctaagaactccggggtgcctctc
tctgggctctcacagagacaggacagcacccaggggggccactacgtcttctccaaggcc
gtgctattgtcccaggcggggggctgcagggtgctgtcctactgtgaacccctcagctgc
ctgctggcctcccatccctccccacacaccacactggtgcccggctatggtgtgaagaag
gtgagtacggtgaatctgaaggcatgccagtatgttcccatccatgttaaacagatcaga
ggcctggcattcaacagacaagctgacagcctcctgctctctgctgccctggacaacacc
atcaaacttaccagtctaatgaccaacacagtggtgcagacgtacaacacgggtaagcca
gtgtggagctgttgctggtgcctggacaacaacaactacgtgtacgctggtctcagtaac
ggctctgtgctggtgtatgataccagagacaccagcacacatgtccaggagctgcagcca
ctacgctctaggtgtcccgtggcatccctgtcctacgtgcctcgcgcctcctccagctcg
ttcccgtgcggcggcctcatcgcaggttctctggaggggggctgcttctgggagcaggtg
gacggcaccacttacagaccccacattttgcccctggagacaggaggctgcacagacatc
caggtggagccagagagcagacactgtctggtcacctacagaccagggcgctccaacccg
tctctgcgttgtgttctgatggagctgaacaggactctacagcaggatgcggcccaggag
cccttgtgttcctgctaccctgtccagaccttcagcgccggctcctcatgcaaagtgctc
accaagaacgctgtgttcagaagcccagccggggagggctccactttggtctgtgccggg
gacgagtccactaactccaccatggtgtgggatgcagggagtggatccctgattcagaag
ttgcctgctgacctcccagtgttggacatctgcccgtttgaggtgaatcagggcagttac
ctggcctcgctcactgagaagatgctcaaaatctacaagtgggaataa
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