Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139406488
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Entry
139406488 CDS
T10872
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139406488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139406488
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139406488
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
139406488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
139406488
NCBI-ProteinID:
XP_071005226
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All DBs
Position
4:complement(14796130..14804465)
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AA seq
561 aa
AA seq
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MFSATRKKFVEGVESDYPDENMYYSQPSMYPHRSDKDVSALSARSHIPTTAPFELEMLSS
PSPSSSGQLSQLGASLYGPQSALGFSIRGMGNNTPQLNRSLTQGTPLPSHITPTTGVPTM
SLHTPPSPSRGILPMNSRNMLNHSQVGQGIGMGGGRTNSMGSSGLGSPNRSPPSIICMPK
QQPARQPFTINSMSGFGMNRNQAFGMNNSLSSNIFNGTVFNLPLTDGSENVTGLDLSDFP
ALAERSRREGSANPTPLLNPLAGRAPYEASSLHLMTSSVGMVTKPSNEPTQDFSIHNEDF
PALPGPNYKDPTLSNDDSKTNLNSTGKSTSSADGPKFPGDKTSSAQNNSQKKGIQVLPDG
RVTNIPGGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFAS
PWASAPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLARYGEDLLFYLYYMNGGDLLQLLAA
VELFNRDWRYHKEERVWITRAPGMEPTLKTNTYERGTYYFFDCLNWRKVAKVKEFHLEYE
KLEERPHVPSTFNYNPAQQAF
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgttcagtgctacgagaaagaagtttgtagagggggtggaaagtgactaccctgatgag
aacatgtactacagccagccgtccatgtacccacatcggtcggacaaagacgtaagtgct
ctgtctgctcgatcgcacatccctactacagctccctttgaacttgaaatgctctcgtct
ccctcaccgtcgtcatcaggtcaactatcccagcttggggccagtttatatggcccacag
agtgcactaggcttctcgataaggggcatgggcaacaacacgcctcagttaaaccgcagc
ttaacgcaaggcactccgctaccgagccatatcacccccaccactggggtgcccaccatg
tctctccataccccaccctcgccaagcagggggatcctgccgatgaactcgaggaacatg
ctgaaccactcccaggtgggccagggcatcgggatgggcggcggcaggaccaacagcatg
ggcagctcagggctaggcagccccaaccgcagcccccccagcattatctgtatgcccaaa
cagcagcctgcacggcagcccttcaccatcaacagcatgtcgggattcgggatgaaccgg
aaccaggcgtttgggatgaacaactcgttatcaagcaacatcttcaatggcacagtcttt
aacctgcccctcacagacggcagtgaaaacgtgacggggctagacctgtctgacttccct
gcgttagcagagaggagtcggagggaaggaagcgcaaacccaacaccgctactcaaccca
ctagctggaagggccccctatgaagcctcttctcttcatctcatgacctcatcagttggc
atggtgacgaagccatcgaacgagccgacgcaggatttctccatccacaacgaggacttc
cctgcactgcctggtcccaactacaaggaccccacgttgagcaacgatgacagcaaaaca
aacctaaactctacaggcaagagcacgtccagtgcagacggtcctaagttccccggagac
aagacgagctcagctcagaacaacagccagaagaaagggatccaggtgttacctgacggg
cgggtgacgaacattcccgggggaatggtgacggaccagtttgggatgattggcttgctg
acgtttatccgagcagcggagacggacccgggcatggtgcacttggcactggggagtgac
ctcacaacgcttggactcaacctcaactctccagaaaacctgtaccccaagtttgcctcc
ccctgggcatcagcaccgtgtcgacctcaagacattgacttccacgtcccctctgagtac
ttaaccaacatccacataagggacaagctggcagctattaaactggcgcggtacggtgaa
gacctgctgttctatctgtactacatgaacggaggagacctgctacagctcctggcagca
gtagagctctttaaccgggattggcggtaccacaaagaggagcgggtgtggatcacgcgg
gcgccgggcatggagcccacactaaagaccaacacctatgagagggggacctactacttc
tttgattgtcttaactggaggaaggtagccaaggtaaaggagttccacctggagtacgaa
aagctagaagagaggccccacgtcccatctaccttcaactacaacccagctcagcaggcc
ttctga
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