Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139406564
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Entry
139406564 CDS
T10872
Name
(RefSeq) nuclear receptor ROR-beta-like
KO
K08533
RAR-related orphan receptor beta
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139406564
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ocla03310
]
139406564
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
139406564
Nuclear receptors [BR:
ocla03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
139406564
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
139406564
NCBI-ProteinID:
XP_071005378
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Position
4:complement(19798079..19819706)
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AA seq
471 aa
AA seq
DB search
MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAIYSCSRQRNCLIDRTNRN
RCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQASQELTAAREEGGEVGGHS
RAYSRGSSAALSDLDDITLPDGLLCDLPLTPEGAEREFCNLEIMGGSGGSSSSSQSSPEQ
NRLDFGDSNHHIKHEYQLLHESGLFTHALLNPLPEGFSMLEIERITASVVKSHIETSQHG
SEELKRLIWSLYTPEETRSFQSKSAEVMWQQCAIHLTNAIQYVVEFAKRITGFLDLCQND
QVILLKAGCLDVLLIRMCRAYNPINNTILFDSKFASAQTFKALGCDDLVGAVFDLAKSLS
RMQLSEEEMALFSASVLLSPDRPWLTDRQQVQKLQEKVYLALQHCLHRGGSSEEKLAKMV
SKLPMMKSICNLHIDKLKFFRLLHPETAFNFPPLYREVFSSEITFPDSTMD
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgagagcacaaattgaagtaataccctgcaagatctgtggggacaagtcatcagggatc
cactatggtgtaatcacctgcgaaggctgcaagggcttcttccgacgcagccagcagaac
aatgctatatactcctgttcccggcagaggaactgtctgattgaccgcaccaaccggaat
cgctgccaacactgccggctgcagaagtgcctggccctaggcatgagccgtgatgcggtg
aagtttggccgcatgtccaaaaagcagagagacagcctgtatgctgaggtccagaagcac
caggcgtcccaggagttaactgccgcccgtgaggagggaggcgaggtcggaggtcacagc
cgggcatacagcagaggctccagtgccgctctcagcgaccttgatgacatcaccctgcca
gacggcctgctgtgtgacctgcccctgacaccagagggcgctgaaagagagttctgcaat
ctggaaattatggggggaagcgggggtagcagctcctcctctcaaagctcacccgaacag
aacagactggacttcggagacagcaaccaccacatcaagcacgagtaccagctgctgcac
gagtccgggctgtttacacacgcactgctcaaccctctacccgagggattctccatgctc
gagattgaacgtataactgctagtgtggtaaagtctcacatagagaccagtcagcatggc
agtgaggagctgaagaggcttatctggtccctgtacacccctgaggagacacgcagcttc
cagagcaagtctgcggaggtcatgtggcagcagtgtgccatccacctcaccaatgccatc
cagtacgtggtggagtttgccaagcgcatcactggattcctggatctctgtcagaacgac
caggtcattcttctcaaagcaggatgtctggatgtgcttctgattcgcatgtgtcgcgcc
tacaaccccatcaacaacactattctgtttgatagcaagtttgctagcgcacagaccttc
aaagctcttggttgtgatgaccttgtgggtgctgtgtttgacctggccaagagcctgagt
cgtatgcagctctctgaagaggagatggctctgttcagtgcttctgttctcctgtcacca
gaccgaccatggttgacagacaggcaacaggtacagaagcttcaagagaaagtatatctg
gctctgcaacattgtctacacagaggtggctcatcagaggagaaactggcaaagatggtg
tccaagcttcccatgatgaagtccatctgtaatctacacattgacaagctcaagtttttc
cgtctgctccacccggagactgcattcaatttcccccctctgtaccgtgaggtgttcagc
agtgaaatcaccttcccagactccacaatggactaa
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