Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139406628
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Entry
139406628 CDS
T10872
Name
(RefSeq) paired amphipathic helix protein Sin3b-like isoform X1
KO
K23213
paired amphipathic helix protein Sin3b
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139406628
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
139406628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
mTOR_dom
MCP_V20_C
CytochromB561_N
Motif
Other DBs
NCBI-GeneID:
139406628
NCBI-ProteinID:
XP_071005535
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All DBs
Position
4:complement(24453339..24462779)
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AA seq
1219 aa
AA seq
DB search
MSVTISGIMAKIQAHSNTKQINQIQDKAYVVQKQVQQQHFQKLKVEDALSYLDQVKIRFG
NDPGIYNKFLDIMKEFKSQSIDTPGVINRVSQLFHGHPDLVLGFNAFLPPGYRIEIPKNG
VVFLQSPFSAQVSPGQGKSMTSPAVSATGSSVAEVGSAQSEAVASPESIYSSSGPPEPPS
RLSLPLPSRESPSQPQSSSVSPPASEPSPVEFDSAISYVNKIKNRFLDHPEIYRSFLEIL
HTYQVHCVINMKEQLEVKESRGHGNSGMTEDEVFSKVASLFKGQEDLLAEFGQFLPDAKR
SLFTGSSLTGKDHLKRAEDEDMSKQSKKRPRPMLLPHMTPLLKKKMKFSCSKDQSFASVG
KHGVLREFTFFDKLRRFFKSREVYENFLRCIALFNQEVVSGAELLQLVTPFLGKFPELYT
QFKSFLGDKELSHSVSGLSDRYMEGGGGREVDYASCKRLGSSYRALPKTYQQPKCSGRTA
ICKEVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLES
VQKKLSRLSPEDQDRFRLDDCLGGTSEVIQRRAIYRIYGDKAPEIIEGLKRSPATAVPVV
LKRLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQGVNFKQNDMKALRSKSLLNEIES
VYDERQEQSTEEGGVVQQGRDGSSAPAVSDPHMVFTYEDKQILEDAASLIIYHVKRQPTI
HKDDKDHIKRIIQHFVPDLFFSRRGELSETEEWTDEEVEERGDRGGGCGGIPGAVATTGS
QQHQQQNGESRRRRCASPQTVELGVASSHSLAPVGGEKVDLRDPEAEHQKELDGVYNLFF
VNNNWYFFLRLHQTLCQRLLRVYRQAERQLLEHRAEQNRERLLMAECRDLAMELRLKQPS
EVELEEYYPAFLDMVRSLLDGNLESTQYEDTLREMFTIHAYIGFTIDKLIQNIIRQLQHL
VSDEVCLQVAELYLAERKRGAAGANLSSQCVRTAWETSYQWKSERVMAEENCFKVMFIQN
QGQVTLTIELLDTEEAQADDPLDVQCLSSYMEQFVGTESTLCSQNEGYFFKPVFLPRNLR
HFRRWQVRQVEAMRCRREWHRQLGVESAGSLDCRFKLNTHKMVFVMNSEDYMYRRGALVK
ARKSQHRVAVNQHERFDKWHQGWLVEHVTPAAERSVHDWLIGEEEEDMIPCKTTCLNTQV
KGLPVNRYQVHYSRKPPSP
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttactatctccgggatcatggcgaaaattcaggcacacagcaacacgaaacaa
ataaaccaaattcaagacaaggcctatgttgtacaaaagcaagtgcaacaacagcacttt
caaaaactgaaggttgaagatgccctatcatacctggaccaagtcaaaatacgatttggg
aatgaccctggaatatacaacaaatttcttgacataatgaaagaattcaaatcacaaagc
attgacacaccgggtgttataaaccgtgtgtctcagctcttccatgggcacccggacctc
gttttaggattcaatgccttcctgcccccagggtatcggatagagattcccaagaatggc
gtggtttttcttcagtccccattctctgcccaggtgtccccaggtcaggggaagagtatg
acaagccctgctgtgagtgccacaggctcatctgttgctgaagttggatctgcccaaagt
gaagctgtggcatcgcctgaaagcatctactcatcctcagggcccccagagcctcccagt
agactgtccttgccactccccagcagagagagcccatcccagccacagtcctcctcagtg
tccccccctgcctcagagcccagcccagtagaatttgacagtgctatcagctatgtcaac
aaaatcaaaaaccgcttcctagaccatccagagatctacagatccttccttgagatacta
cacacttaccaggtacactgtgtcatcaatatgaaagagcagcttgaggtcaaggagagc
cggggtcatggtaatagtggaatgacagaggatgaagttttctcaaaagtagccagcctc
ttcaaaggccaagaggacttactggctgagtttggacagttcttaccagatgctaagaga
tcactgttcactggcagctccctgactgggaaagaccatctgaagagggcagaggatgag
gacatgagcaaacagagcaagaagagacccaggcccatgctgctgcctcacatgacacca
ctgctcaagaaaaagatgaagttttcatgctccaaagaccagtcctttgcctcagttggg
aagcatggagtcttgcgggagttcacattttttgacaagcttcgccgtttcttcaagagt
cgggaggtatacgagaacttcctccgctgtattgctttgtttaaccaggaagtggtttcg
ggagcagagctgctgcagcttgtcactccctttctggggaagtttccagagctatatacc
cagttcaagtcttttctgggggacaaagagctctctcattcagtgtctggcctgtcagac
cgatacatggaaggaggtgggggcagggaggtcgactatgcctcttgcaagcgcctggga
tccagctacagagcactacccaagacttaccagcagcccaagtgcagcggtcgcactgct
atctgcaaagaggtgctgaatgacacctgggtttctttcccctcgtggtcggaggactct
acgtttgtgagctcaaagaaaactccatatgaggagcagcttcatcgctgtgaggacgaa
aggtttgagttggatgtggtcctggagactaacctggccaccatccgggtcctggagagt
gttcagaagaagctgtcccgtctgtcgcctgaggaccaggaccgcttccgtctggacgat
tgtctgggaggcacatctgaggtcatccagcgccgagccatctaccgtatctacggcgac
aaggcccctgagattatagaggggctgaagaggagccccgctactgccgtgcctgtggtg
ctcaagagattgaaagcgaaggaggaggagtggagagaagcccagcagggcttcaacaag
atctggagggagcagtatgagaaggcctacctcaagtccctggaccaccagggggtcaac
ttcaagcagaatgacatgaaggcccttcgatccaaaagcctgctcaatgagattgaaagt
gtttatgatgagcgtcaggagcagagcacagaggaggggggcgtggtccagcaggggcgt
gacgggagcagtgcgccagcggtcagcgatccccacatggtgttcacctacgaggacaag
cagatcctggaggacgccgcctctctcatcatctaccacgtcaaacgccagcccaccatc
cacaaggacgacaaggaccacatcaagcgcatcatccagcactttgtccccgacctcttc
ttctcccgccgcggcgagctcagcgagacggaggagtggacggacgaggaggtggaggag
agaggagaccggggaggaggatgtggcggtataccaggagccgtagcaacaacaggcagt
cagcaacatcagcagcagaacggggagtcgaggcggcggcgctgcgcctctccccagaca
gtggagctgggtgtagcctcgtcccatagcctggctccagtgggaggggagaaggtggac
ctgagagaccctgaggcagagcaccagaaggagctggacggagtctacaacctgttcttc
gtcaacaacaactggtacttcttcctgcggcttcaccagaccctgtgccagcggctgctg
agggtgtaccggcaggcggagaggcaactgctggagcaccgggcagagcagaatcgtgag
aggcttctgatggccgagtgccgggacctggccatggagctccgcctcaaacagcccagt
gaggtagaactggaggagtactacccagcgttcctggatatggtgcgcagtcttctggat
gggaacctggagtccacacagtatgaggacacattgcgggagatgttcaccatccacgcc
tacattggcttcaccatcgacaagctcatccagaacatcattagacagctgcagcacctg
gtgagtgacgaggtgtgtcttcaggtggctgagctgtacctggccgagaggaagaggggc
gcggcgggggctaacctgtcatcccagtgtgtgagaacagcctgggagaccagctaccag
tggaagtcggagagggtcatggctgaggagaactgctttaaggtaatgttcattcagaac
caaggccaggtgaccttgaccattgagctgctggacacagaggaggcccaggctgatgac
ccattggatgtacagtgcctgtccagctatatggaacagtttgtagggacagagtcaacg
ctttgctcacagaacgaaggctactttttcaaaccggtatttttgcccaggaacctgagg
cacttcagacgctggcaggtgcgccaggtggaggcgatgcgctgcagacgggagtggcac
agacagctgggagtggagagtgctggcagtctggactgccgctttaaactcaacacccac
aagatggtgttcgtcatgaactctgaggactacatgtaccgccggggagcgctggtcaaa
gccaggaagtcccagcacagggttgctgtgaaccagcacgagcgctttgacaagtggcac
cagggctggctggtggagcacgtgaccccggcggccgagcgctcggtccacgactggctc
ataggtgaggaggaggaggacatgattccgtgcaagaccacctgcctcaacacacaggtc
aaaggcctgcctgtcaacagataccaggtgcattacagtaggaaacctccctctccgtag
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