Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139406629
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Entry
139406629 CDS
T10872
Name
(RefSeq) replication factor C subunit 4-like isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03030
DNA replication
ocla03410
Base excision repair
ocla03420
Nucleotide excision repair
ocla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
139406629
03410 Base excision repair
139406629
03420 Nucleotide excision repair
139406629
03430 Mismatch repair
139406629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocla03032
]
139406629
03036 Chromosome and associated proteins [BR:
ocla03036
]
139406629
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139406629
DNA replication proteins [BR:
ocla03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
139406629
DNA Replication Termination Factors
ELG1-RFC complex
139406629
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
139406629
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
139406629
Check point factors
HRAD17(Rad24)-RFC complex
139406629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_16
AAA_22
AAA_30
AAA_assoc_2
AAA_11
Mg_chelatase
DUF815
RuvB_N
AAA_24
SLFN-g3_helicase
AAA_28
AAA_14
AAA_5
AAA_19
Gp44_lid
ResIII
RPA_interact_N
Cdc6_lid
AAA_7
Motif
Other DBs
NCBI-GeneID:
139406629
NCBI-ProteinID:
XP_071005537
LinkDB
All DBs
Position
4:complement(24495450..24504243)
Genome browser
AA seq
357 aa
AA seq
DB search
MQAFLKGTSTQGTRPLKEKGAGTSGEKKQKSVPWVEKYRPKCMEEVAFQEEVVAVLKKTI
KGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKRF
AQLTVAGHRTDGKPCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYVSRI
IEPLTSRCSKFRFKPLANQVQEERLLEICYKENLKYSKEGIAALVKVSEGDLRKAITFLQ
SAARLNTDNEITESAVIEIAGVVPPKMINNLLKICYKGTFEKLEIAVRNMVDEGYAATQI
INQLHEAIIEEELNDKQKSAITEKMAVVDKCLVDGADEYLQMLSLCSVILQQATQSN
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgtttttgaaaggaacatctactcaaggcaccagacctctgaaagagaaaggt
gccgggaccagtggagagaagaagcagaagtctgtcccctgggttgagaaatatagacca
aaatgtatggaagaggtggcatttcaagaggaggtggttgctgtgctgaagaagactata
aagggcgccgatctccccaatctgctgttctatggaccacctggaacaggaaagacgtcc
accatcctggctgcagccagggaactttatgggccagagctgtaccgacagagagtcctg
gaactgaacgcctctgatgagagagggattcaggtggtcagagagaaagtcaagagattt
gcccagctgactgtagcaggacaccgcactgatgggaaaccatgcccaccctttaagatc
atcatcctggatgaggctgactcaatgaccaacgctgctcaggctgctctcagacgcacc
atggagaaggagtcccggaccacccgcttctgtctcatctgcaactatgtcagcaggatt
attgagccattgacatccagatgctcaaaattccgcttcaaacctctggccaatcaggtc
caagaagagcgcctgctagaaatctgttacaaggagaatctcaagtactcgaaggaggga
attgcagcgttggtgaaggtttcagagggggatctgagaaaagccataacctttcttcaa
agtgctgcacggctgaacacagataatgagatcacggagagtgcggtcatagagatagca
ggggttgttccccccaagatgatcaacaatttgcttaaaatctgttacaagggcacattt
gaaaaactagagattgctgttcggaacatggtagatgaaggctatgccgccacacagatc
atcaaccagctacacgaagccatcatagaggaagagctgaacgacaagcagaagtctgcc
atcacggaaaagatggcagtggttgataagtgtctagtggatggtgcagatgagtacctg
cagatgctgagtctgtgttctgtgatcttgcagcaagccacccagagtaactga
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integrated database retrieval system
