Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139406712
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Entry
139406712 CDS
T10872
Name
(RefSeq) nucleoprotein TPR-like isoform X1
KO
K09291
nucleoprotein TPR
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
Brite
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139406712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139406712
NCBI-ProteinID:
XP_071005758
LinkDB
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Position
4:complement(30051319..30089486)
Genome browser
AA seq
2354 aa
AA seq
DB search
MSAVLLQALERAEITKLPKAVQNKLEKLISDLQYEIDFLKSHQEQFRVDSEQQFFEKVQR
LEQSQEQFVTQTEQHHKLREEFTKINEELKSVRENNKKCEINQEKFTSEQVQFSKAKDEL
ESEKRELVHTLERRSQEVDYLSEDLQHLNNKVAEVNTTKMGLQLKLDELESSEVNIKYRE
KRMAQEKELLQDQTAWLNGELKAKSEELLALSRQKGNEILELKCSLENKEDELNRVQDQV
TSLKTSSESLQKQTEDMISKLKEAKEQHASMEEKFRNELNANIKLSNLYKGAAADSESKS
EELSGAVEELHKLLKDAVEANKALEVKLQEMDACRIKEAAELKDSISSLEKELDNANELL
SDTKLRGAASVLSEETVTTMSPTAAAVAKIVKPGMKLTELYTAYVETQEALELQRVENKR
VNKYLDDIVQEVEAKGPVLKRQRDEHERMQKSVASLSAKLEQAVKEVQRLQKVTDEANKH
SSVLERDNRRSEVQLADMAQQIRVLLIELEEARGNHVAFDEEVSSADISSTSEVITQHLV
TFRGVEELQQQNQRLLVALRDLSDAQEREETETTGTKRSELERSLEKAQAELEALREQRS
HQMQLAESIVRQRDMYRVLLAQATGVSFPQQGAAPEEFSLTSTPHRSPAATPTTAAPTGI
VTMATESTEAVEAKAALRQLQEVFSSYKRERSESDKALAEQTEKLQEQVSDQRSQNAKIS
TQLEFTSKRYEMLQDNVEGYRKDIATLKEKGQKMAAVAQKNEQTVNTLTEDLRVAQEKLN
MAEGRAESLRKERDMLKLVESRLTQEKETMQTQQRGQNMLLTNLKTIQATLERSETDTRQ
RLSAQIEKQEREIGQLQKRLGHDVEQRHLLGRNQDLQLMDAKRQLETQTGLLQKTRDQLS
AAQLEISSLRLQQGSEEGGRPSLGSQSSPSIPMGLKGLHGSKGDSEDLRGRLRQAETQAE
ELAEQLRTATSSKEQYRAMAQSLEESMDKEKQVMEQARSSMEERVKEAQEQHRHLERKLL
EAEKEKQGLQEEKRKALASVEQQVAELRRSLSSMQADHQEALQRAVVAAAQEQQAILDSQ
EQATLVSEAQDKYEREMMLHAADVEALQAAKAQALQAATLRQQLEERAQRTSAQLLEARV
SWEEQERILKEEMSKVVSRSEELQRQNSLLHEQIQTMSSKIAATLQRQVNESPLNISLTE
QGKSQDQVLEILRFVRREKEIAESRFEVAQGESLRHRLRVEHLERELRELQESFSAERER
MQVTAKTLAQHDELMKKTETMSVLMETNKMLREEKERMEQELQQTQAKVRKLELDVMPMQ
ESNAELSEKSGMLQAEKRILEEDIKRWKARTQQLVSQQKDPEEYKRLHFEKEAHLKRIQQ
LTEETGRLKAEVTRSGGSVTSLQSQVQILREGLGKVSSERDVLRRDVEAKNLDIQEKFRT
ITQVRKIGRRYKAQYDELKVEHDKMVSEAASTPAQEQEAQQASAQELQGLRDSLGQSETR
TRDLEGQLDNLNKVVAEREAEVRGTQEQASGLQTELTRLRQELQEKASQEDTLRQQMSEK
EEKTRKAFVGAKQKINQLIGSKDQLQKENEELKQQREELEVRVSALKSQYEGRLSRQERE
LRDLREQQERHGEQRDEPPEQGLNKAQEQQRTTEQRGPLKTTPAADRGSASTSEPPTANI
KPTPLGAQGQSKPPVNPGNKSTPRASIRPMITPATVPTPTPTATVMPTTQVENQEAMQSS
EGPLEHVTVYGSASGSVRSTSPSVQTANPVLAVQQTQTTAFVQPTQQQSLPHTEPANQEQ
PLAPVVIEAAPSSQVERPSTSTAVFGTVSATPGTSSMSKRPREEEQDTSTVTDTDTPQED
PSEPPIPKKLRIIQRVDPEEPEAQEEVLAESSTEGLVPGESHEAPESSQQVVEEYPVLDE
ADEGTASQSVPVELLLSQPTEVTLSYDSPEESPQHDVIVIVTDSESEDEQEDDEEEEPDY
DEEEEDDEDEEDGGMGEEGEESNEGSGDGNEAYEDDYTEGADATDPGTETEESLGASDST
QRPDDSQTHSFEGSSSMEAFSSDPTSSAPRIPRSPRRAPHPLPPRLNITQELGPPAQVQR
SMRRQSVGRVPQLTPGMASSGQHYFDDDDRMVPSTPTLVVPHRSDGFAEAIHSPQVSGVP
RFRFGTPEDLISQTSHSDLGQLASQGLGMYDSPLFLPGHEDESGGRSVPTTPLQVAAPVS
TFTEVPPSDCTEHSSLSVPMVTSSTPGQAVAGGSPPGDERDVLMESEGDRVEVSLEPVAS
QAGEMEEPAQPSDDASLPSTSQEPSSSSADTSSTQPKPSRPGPSRQLQRWTENHMRRGTL
PSRGVTGTGRRFAR
NT seq
7065 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagtgctactacaagctctggagcgcgctgagataacgaaactcccgaaagct
gttcaaaataaactggaaaagctcatctctgatctgcaatatgaaatagatttcctcaag
tcacaccaggagcaatttagagtcgatagtgaacaacagttctttgagaaagtgcagcgt
cttgagcagagtcaggaacagtttgtgacccagactgaacagcaccacaaactccgagag
gagttcaccaagatcaatgaagaactcaagagtgtgcgggaaaataataaaaagtgtgaa
atcaaccaagaaaagtttacatctgaacaggtccagttctcaaaagccaaagatgaactg
gagtcagagaagagggagcttgtgcatacactggagaggagatctcaggaagtggactat
ctgagtgaggacttgcagcacctcaataacaaagtggcagaagtcaatacaacaaagatg
gggctgcagctcaagctggacgagctcgaatcctcagaggtcaacatcaagtaccgtgag
aagcgtatggcgcaggagaaggagctgttgcaggaccagacggcctggctgaatggagag
ctcaaggctaagagtgaggagctgctggccctgtcacgtcagaagggcaacgagatcctg
gagctcaagtgcagccttgagaacaaagaggatgagttgaacagagtccaggaccaagtg
acaagtttaaagacttcaagtgaaagccttcagaagcagactgaagacatgatcagcaaa
ctgaaagaggctaaggagcagcacgctagcatggaggagaagtttaggaatgagctgaat
gccaacataaagctctccaacttgtacaagggagctgctgcagactctgagtccaagagt
gaggagttgagtggggctgtagaggagctgcacaagctgctgaaggatgctgtagaagcg
aacaaggccctggaggtgaaactgcaggagatggatgcctgtcggatcaaggaggctgct
gagctgaaggacagtatctccagtctggagaaagaactggacaacgccaacgaacttctg
tccgacaccaagctcagaggtgcagcctcagtgctgtcagaggaaacggttaccaccatg
tccccaactgcagccgccgtggccaagattgtcaaacctggcatgaagctgactgagttg
tatacggcgtatgtggagacccaggaggcgctggagctgcagcgtgtggagaacaaacgg
gtgaataagtacctggatgacatagtgcaggaggtggaggccaagggtcccgtcctcaaa
cgccagagggacgaacatgagcgcatgcagaagtctgtggccagcctgtcggccaagctg
gaacaggcagttaaggaggtgcaacgtctgcagaaggtgactgacgaggccaacaagcac
tcttctgtcctggagcgagacaaccgtaggtctgaggtgcaactggcagacatggcacag
cagatccgtgtcctactcattgagctggaggaggcacgtggcaaccacgtagcattcgat
gaggaggtgagctctgctgacatcagcagcacgtcggaggtcatcacacagcacctggtg
acgttccgtggcgtggaggagctccagcagcagaaccagcgcctcctggtggccctccga
gacctcagcgacgcacaggagagagaggagactgagaccacaggcaccaagcgcagtgag
ctggagcggagtctggagaaggcccaggcagagctggaggctctgagggagcagcggagc
caccagatgcagctggcggagtccattgtcaggcagagagacatgtaccgtgtgcttctg
gctcaggccactggagtcagcttccctcagcaaggtgcagcacccgaggaattctccctg
acctccaccccccaccgctctccagctgccacccccaccacagccgcgcccactggaatc
gttacaatggcgacagagtcaactgaggcggtggaggccaaggcagccctccgacagttg
caggaggtgttctcctcctataagagggagaggtctgagagtgacaaggccctggcggaa
cagactgagaagctacaggagcaggtgtctgaccagagatcacagaatgccaagatatcc
acccaactggagtttacctccaagaggtatgagatgctgcaggataatgtggagggctac
aggaaggatattgccactttgaaggagaagggacagaagatggctgctgtagcccagaag
aatgagcaaactgttaacaccttgacagaggacctgagagttgcacaggagaaactcaac
atggcagagggtcgtgctgagagcctcaggaaggagagggatatgctgaagctagtggag
tccagactgacccaggagaaagagaccatgcagacccaacaacgaggacagaacatgctg
ctcaccaatctcaagaccatacaggccacattggagcgctcagagacggacaccaggcag
cgcctgagcgcccagatagagaagcaggaaagagagatcggccagctgcagaagagactg
gggcacgatgtggagcaacgccacctgctgggcagaaaccaagatttgcagctgatggat
gccaaaaggcagctggagacccagacaggcctgctccagaagaccagggatcagctgagt
gctgcccagctggagattagctctctcaggctgcagcagggcagtgaagaaggcggccgt
ccgtccctgggctcccaaagctccccgtccattcccatgggcctcaaaggactccatggt
tcaaaaggggactctgaggatctgcgtggccgcctgaggcaggccgagacgcaggcagag
gagctggcagagcagttgaggacagccacctccagcaaagagcagtacagagccatggcc
cagagcctagaggagtccatggataaggagaagcaggtgatggagcaggctcggtcctcc
atggaggagcgtgtaaaggaggctcaggagcagcaccgtcatctggagagaaagctcctg
gaggcagagaaggagaagcagggcctacaggaggagaagaggaaagccttggcctccgta
gagcagcaggtggctgagctgaggaggagtctgagcagtatgcaggctgaccaccaggag
gcactacagagggcggtggtggcagcagcccaggaacagcaggccatactggatagccaa
gagcaggccacgctggtgtcggaggcgcaggataagtacgagcgtgagatgatgcttcac
gctgcagacgtggaggccctccaggcagcgaaggcccaggctctgcaggcagccacgctc
agacagcagctggaggagagggctcagagaacctctgctcagctgctggaggccagagtc
tcctgggaggaacaggagaggatcctcaaggaggagatgtctaaggtggtgtctcgctct
gaggagctgcagaggcaaaacagcctcctccatgaacagattcagaccatgagcagcaag
atagccgccaccctgcagcgccaggtcaacgagagccctctgaacatctccctcactgag
cagggaaagtctcaggaccaggtcctcgagatactcaggtttgtgcgtcgggagaaggag
atagcggagtcacggttcgaggtggcccagggagaaagtcttcgtcacaggctgagagtg
gagcacctggagagagagctgagagaactgcaggagagctttagtgctgagcgggaaagg
atgcaggtgacagctaagaccctggctcagcacgatgagctgatgaagaagactgagacc
atgagtgtcctgatggagaccaacaagatgctgagagaggagaaggagaggatggagcag
gagctgcagcagacacaggctaaagtgcgtaagctggagttagacgtaatgcccatgcag
gagtccaacgctgagctgagtgagaagagcggcatgctgcaggcagagaagaggattctg
gaagaggacatcaaacgctggaaggccagaacacagcaactggtgagccagcagaaggac
ccggaggagtacaagcgtctccactttgagaaagaggctcacctcaaacgcatccagcaa
ctcactgaggagacaggcaggctcaaggctgaggtgaccaggagtggcgggtcggtgacg
tccctgcagagccaggtgcagatcctgcgtgaaggcctggggaaggtgagctctgagagg
gatgtgctgaggagggacgtggaggccaagaacctggacatccaggagaagttccgcacc
atcactcaggtcaggaagattggccggcgctacaaggcccagtatgatgagctcaaggtg
gagcacgacaagatggtgtcagaggcagcatccacaccagcccaggagcaggaggcccag
caagcctcagcccaggagctccagggtctaagagactccctgggacagtctgagacccgg
actagagacctggagggacagctggataacctcaacaaggtggtggctgagcgtgaggca
gaggtgcgtgggacccaggagcaggcctccgggctgcagacggagctgaccaggttgaga
caggagctgcaggagaaggcctcccaggaggacaccctcagacagcagatgtctgagaag
gaggagaagaccaggaaagccttcgtaggggccaagcagaagatcaaccagctcatcggc
tccaaggaccagctgcagaaggagaacgaggaactgaagcaacagagggaggagctggag
gtcagggtcagtgctctgaagtcacagtacgagggccgtctgagccgacaggagagggag
ctgcgggacctgagggagcagcaggagagacacggggagcagagggacgagcctcctgaa
cagggcctcaacaaggcccaggaacagcagaggaccaccgagcagagaggaccactgaag
accaccccagctgcagacaggggcagcgccagtacctcagagccccccactgccaacatc
aagcccactcctctgggggcccagggccagagcaagccccctgtcaaccccgggaacaag
tccactccccgggccagcatccggcccatgatcacccccgccactgtgcccacccccact
cctactgctactgtcatgcccacaacacaggtggagaaccaggaagccatgcagtcttct
gagggcccgctggagcatgtgactgtgtatggcagtgccagcggttcagtacggtcaacc
agccccagcgttcagaccgccaacccagtgctggcggtccagcagacccagaccacagcc
ttcgtccaaccaacacagcaacagagcctgccccacactgaaccagccaatcaggagcag
cccctggccccagtcgtcattgaagctgcacccagctcgcaagtggagaggccttcgacg
tccacagctgtgtttgggacagtttcagccaccccagggacatcctccatgtccaagaga
ccgcgtgaggaggagcaggacacctctacggtgactgacacggacaccccccaggaggac
ccgtctgaaccccccatccccaagaagctacgcatcatccagagggtggacccagaggag
ccagaggcccaggaggaggtgctggctgagagcagtacagagggattggtgcctggagag
agccacgaggccccagagagcagccagcaggtggtggaggagtacccagtactagacgag
gctgatgaggggacagcgtctcagtctgtccccgtagagctactcctgtcccagcccaca
gaggtcacactctcatacgactcccccgaagaatcccctcagcacgacgtcatcgtcata
gtgactgactcggagagcgaggatgagcaggaggatgacgaggaagaggaaccggactat
gatgaagaggaggaggatgatgaggatgaagaggatggcgggatgggagaagagggagag
gagagcaacgaaggtagcggagacggcaacgaggcatacgaagacgactacacagagggt
gctgacgcgacagacccaggcacggagacagaggagagtctaggagcatcagactccact
cagcgcccggacgactcccagacacacagctttgagggcagcagcagtatggaagccttc
tccagtgacccaaccagttctgctcccagaataccccggtcaccacggagggcaccccac
ccgctgcccccccgtctcaacatcacccaggaactgggcccccctgctcaggtacagcgc
tccatgcgtcgccagtctgtaggcagagtccctcagctcacccctgggatggccagcagc
ggacagcactactttgacgatgatgacaggatggtacccagtactcctactctggtggtg
ccacaccgctctgacggctttgcagaagctatccattctccccaggtgtctggtgttccc
cgattccggttcggcaccccagaggacctgatatcccagacctcccactctgacctggga
cagctggcatcacaaggtctggggatgtatgatagtcctctgttcctgccaggtcatgag
gatgagtctgggggccgcagtgttcccacgacacccctgcaggtggctgccccagtgtcc
acattcacagaggtcccgccctctgactgcaccgaacactcctccctgtctgttcctatg
gtaaccagctctaccccgggccaggcggtggctggaggatcccctcctggggacgagaga
gacgtcttaatggagtctgagggagaccgtgtggaggtgtctctggagccggtggcgtct
caggcaggggagatggaggaacctgcccagccctcagacgacgcaagcctgccttctacc
agccaggaaccctcctccagctctgcagacactagtagcactcagcccaaaccctctaga
ccaggacccagccgtcagcttcaacgctggacagagaaccatatgaggagagggacgttg
ccatcacggggtgtaactgggacagggaggagattcgccagatga
DBGET
integrated database retrieval system
