Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139406793
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Entry
139406793 CDS
T10872
Name
(RefSeq) probable proline--tRNA ligase, mitochondrial
KO
K01881
prolyl-tRNA synthetase [EC:
6.1.1.15
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
139406793
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
ocla01007
]
139406793
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ocla03016
]
139406793
Enzymes [BR:
ocla01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.15 proline---tRNA ligase
139406793
Amino acid related enzymes [BR:
ocla01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
139406793
Transfer RNA biogenesis [BR:
ocla03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
139406793
Prokaryotic type
139406793
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2b
HGTP_anticodon
GRXCR1_C
Zn_ribbon_8
Motif
Other DBs
NCBI-GeneID:
139406793
NCBI-ProteinID:
XP_071005929
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Position
4:complement(38447056..38450378)
Genome browser
AA seq
482 aa
AA seq
DB search
MEVLMHHLWQRVLPCLPRAMSTPCKSYLSCAAGHAPTDSISRPSTHLPLVSHLFQPSNLR
DVGQEKRAQVDMTCKSQRLMQQAGLIHPSNPGCYYYLPATVRSMEKLVRLIDQEMQGIGG
QKLDMPSLCSAELWRRSERWDLMGKELFRLRDRHGAEYCLGPTHEEAVTELLASQGTLSY
RQLPLLLYQITRKFRDEPKPRFGLLRGREFYMKDMYTFDMSEEAAYHTYESVCQAYTRLF
SRLGLCIVQVHADTGNIGGKLSHEFQLLADIREDRLLVCGSCSFSANVETMEPGQTDCPQ
CQEGTLVESKGIEVGHTFYLGTKYSCIFNATFNNTQNKPAVTEMGCFGLGVTRILAAAIE
VMSTEEAIRWPGLLAPYQVCVLPPKRGSKVDEVAGLAEELALSLGEALPRLRGEVVLDDR
TQMTIGKRLKDASRLGYPYVVVVGQKAAEETPRFEVICQQTGETTFLSRDGLVDLLRCVE
TV
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgttgatgcatcacctttggcagagagtcttgccctgcctacccagagccatg
agcactccctgtaaaagctatttgagctgtgctgctggacatgcccccactgactccatc
tcccgacctagcacacaccttcccctagtctcccatctcttccagccctccaacctgcgt
gatgtgggccaggagaagcgtgctcaggtggatatgacctgcaagagccagagactgatg
cagcaggcaggtctcattcatccctccaaccctggctgctactactacctcccggccacc
gtgcgctccatggagaagctggtgaggctgatcgaccaggagatgcaggggatcggtggg
cagaagctggacatgcccagcttgtgttcggcagagctgtggagacgcagtgagcgctgg
gacctgatggggaaagagctgttccgcctgagggaccgccacggggcggaatactgcctg
ggccccacccatgaggaggctgtgacagagctactggcctctcagggaaccctgtcctac
aggcagctgcctctgctactctaccagatcacccgcaagttccgtgatgagccgaagcct
cggtttgggcttctacgcgggcgggagttctacatgaaggacatgtacacatttgacatg
agcgaagaagctgcataccacacatatgaatctgtgtgtcaggcttacacccgccttttc
tctcggttaggcctgtgcattgtccaggtccacgctgatacaggaaacattggaggtaaa
ctctcccatgagttccagcttctcgccgacatcagagaggacaggctactggtctgtggt
agctgctccttctctgccaatgtggagaccatggaaccaggccagacagactgcccacag
tgccaggagggaacgctggtggagtctaagggcatagaggtaggccatacattctaccta
ggcaccaagtactcctgcatattcaacgccaccttcaacaacacccagaacaagcctgct
gtcactgagatgggctgcttcgggctgggtgtgacccggatcctcgctgctgccatcgag
gtgatgtccacggaggaggcaatccgctggcctgggctgcttgccccctatcaggtctgt
gttctgccccctaaaaggggcagtaaggtggatgaggtggctggtttagctgaggagctg
gccctcagtctgggggaggctctgcctaggctaagaggtgaggtggttctggatgaccgg
acacagatgaccattggtaagaggctgaaggacgccagtcggcttggatacccgtacgtg
gtggtagtggggcagaaggctgccgaggagacgcccaggtttgaggtgatctgtcagcag
actggtgagacaacgttcctcagtagggatggacttgtagacctactcagatgtgtggag
acagtctga
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