Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139406996
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Entry
139406996 CDS
T10872
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139406996
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
139406996
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
DUF5816
Motif
Other DBs
NCBI-GeneID:
139406996
NCBI-ProteinID:
XP_071006329
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Position
4:58390384..58403695
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AA seq
600 aa
AA seq
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MDEEQTGGYSDICGQCGEVNWGVSDEGRFYCRSCHNVIERTKEVVDTNTFMVGTSRVSSI
SKGTRRKKLEQGREWMVCEGFQFILKHQAEALLAMGVCPQFKDDVLCQFWRMYLQKSRQA
YTKNPVHDGKFRLRSQGSGESDSAPESSVISDSMMSASETDGDGDWASGGGSVSGHTSDG
ASSVCSGSIDAVSYLTPRQRRSQGLMSMPKTLALCHLALLWAREAITLADLLRFVNEGHI
PYVNAYEDFPEEMKLYGRDSLIFRVESIPSYSHLHKEAQALAVFLELPLFPPITLDCLLH
PSLLTLRYLTEANLPDELHDWVCRIMEKAGMESSVTFEPMRSRSPLPHYDVQAAALIIIA
MKLLFKLDDHTEWDLSNDASDKNKENPDGNSFNLRWWYRTMQTALTTAARRQQDNIARKH
WKPQKPLYTSKKDKSVVLKRRRIAEQLQLSFQKLSSSPVAPPSTPPSSFCFRWGEEGEEV
WDGPSLHHLTLDSSVRQRGASLQPANPEYWHPALRACKPRFCKSHYAEVEVTLPRMYVWL
LDLFSFLLGVKPGCVYEEVLKVERRFLGSSKSQPRARATPRKTQPKKLHKRKQTSKTCSR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaacaaacggggggctacagcgatatctgtggccagtgtggagaggtgaac
tggggggtgtcggatgagggtcggttctactgcaggtcctgtcataatgtcatcgagaga
acaaaagaagtggtggatacaaacacttttatggttggtaccagcagagtgtcctccatc
tctaagggaaccagaaggaaaaaactagagcaagggcgagagtggatggtgtgtgagggc
tttcagttcatcctaaagcaccaggctgaggctcttctggccatgggagtctgcccacag
ttcaaggatgacgtgctgtgtcagttttggagaatgtacctacagaagagccgacaggcc
tacaccaagaatcctgtgcatgatgggaaatttagactgcgttctcagggctctggggag
tcagacagtgctccggagtcgtcagtgataagtgactctatgatgtctgcctctgagaca
gacggggatggagattgggcaagtggaggaggctctgtctcaggtcacaccagtgacgga
gcctcctcggtgtgttccggttctattgatgccgtctcgtacctgaccccgcgccagagg
aggagccaggggttgatgagcatgcccaagaccctggcactgtgccacctggccctgctg
tgggccagagaggccatcacactggcagacctgctcaggtttgtgaatgagggccacatc
ccctatgtgaatgcctacgaggacttcccagaggagatgaagctctacggccgagactca
ctcatcttcagagtggagtctatcccctcttacagccacctgcacaaggaggcccaggcc
ctggctgtgttcctggagcttcccctgttcccccccatcaccctggactgcctgctgcac
ccctccctgctcactctccgctacctcaccgaagccaacctgcccgatgagctgcatgac
tgggtgtgcaggatcatggagaaggctggtatggagtcgtccgtgacctttgaacccatg
aggtccagatcccctctcccacactacgatgtccaggctgctgccctgatcatcatcgcc
atgaagctgctcttcaaactggacgaccacactgagtgggatttatccaatgatgcaagt
gacaagaacaaggagaacccagatgggaacagctttaacctgaggtggtggtacaggaca
atgcagactgccctgaccacagctgcacggagacagcaggacaatatagccagaaagcat
tggaagccccagaaacctctatatacctcgaagaaagacaagtcggtcgttctcaaaagg
agacgtattgcagagcagctccagttgagtttccagaaactgtctagttcccctgtggcc
ccaccatccacccctccctccagcttctgtttccgctggggtgaggagggggaggaggtc
tgggacgggcccagcctgcaccacctgaccctggacagcagcgtccggcagagaggggca
agcctccagcccgccaacccagaatactggcacccagccctgagggcctgcaagcccagg
ttttgtaagagccactatgcggaggtagaggtcactctccccaggatgtacgtgtggctg
ttggacctcttctccttcctcctgggggttaaacctggctgtgtatacgaagaggtactg
aaggtggagaggcgcttcctcgggagcagcaagtcccagcccagggcaagagctacgccc
agaaagacacagcccaaaaaactacacaaacgcaaacaaaccagtaaaacatgttctcgg
tga
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