Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407001
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Entry
139407001 CDS
T10872
Name
(RefSeq) AT-rich interactive domain-containing protein 1B-like isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139407001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139407001
03021 Transcription machinery [BR:
ocla03021
]
139407001
03036 Chromosome and associated proteins [BR:
ocla03036
]
139407001
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
ARID
139407001
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
139407001
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
139407001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
139407001
NCBI-ProteinID:
XP_071006333
LinkDB
All DBs
Position
4:complement(58540468..58655890)
Genome browser
AA seq
2242 aa
AA seq
DB search
MAAQVATAPTSNGKKRSNLASSLSQDLKSGKSGVVGGAVLGVGNGTSVHAMNNVERHELN
PTSRARASPANNDSNPREKESRDSRSASFSTSNSSMETGMFVNHKVKNVGGEDTPSLHHT
PPQQQPFNQFLQHQQRQIQNNNQQSLHGESGNRQHGESGNRQHGGKGNVVLGNTVERHQQ
QEMLNKNEDDQPSKTEDRLDSRYEHASSGPTNNNINPSQSGTSSVSEFNSYYGNGKGGPC
FDQHGGQQSPGSGIMHSVQQNMDQVQQNSHEGYHNNPYNHYPTYRPGYGNSGYGMMSPSR
QGNNMMGLGSNTAAANHSKAAMAAASSGGANVGGFQRFPGQTQQHPSGATPTLNQLLTSP
SPMMRGYGGGYQDYTNPSAQQQQSSMGLTKDINPQYGSVTHVWGGQQRNHPAMSPGNNGQ
GSGRSQVPPMDTMAMKRSQLYGIGNNPYSQQQQGGGGSYPGQPYGSPSPHRYPMGMHGRG
QVGMSGMQYPQQQQQMVAQYGQQHQGQQGGYCQPQGQSPYFSPPQQQPTAPTQPPYMQPR
PPPPQQDVSQEGYGNRGQSAMTPGKPNHEEMGLSQQDRPSSLPDLSGTIDDLPTGTEVAV
SSAVSASGSTSSQGEQSNPAQSPFSPHVSPRLPGLRSGPSPSPVGSPVGSSQSRSGPISP
ASVPGTQMAPQTPGNMSDVGSHSTLSQSPMSQERGFPPAMQRNTPGPQQSGQGPPVSPHP
SLGGSMHPGSYHQQQQGGPGPSYGSQTSQYGPQGNYPRPPNYGGAPSANYSGPGPGMSNS
LGMNASSPMHGQGPGQPCGSMPAGRGLGPGASGRPYPCATTNTMAPTSPSMPQPAGQGQG
MRPPLPNVNRKPGHEAGPGPNAMQGPNAGSNPSAQGRQGMTPMPHHPGMNPVGPGGVGPS
PGGLYSQQPGANTSGRMTPQGPHPLYNAPPPSGPMQMGGEGMVGPPDPKRRPPEQHREGN
TPAPAVEPPPKPKKPSPATMTNEKIRILYEMGGEPERRMWVDRYLAFMEERGTPVPMLPA
VGKKPLDLCRLYLSVREIGGLAMVNKSKKWRELSTHLNVGTSSSSASSLKKQYIHYLFAF
ECKVERGEEPPLEIPGETKKQAQAHQARIQPPSPANSGSLQGPHTPQSTGSSSMSEMPEG
MKRPTPATTPHGHMTPQPGNRNSGGIRVQDPFSEISDPAFHKRGPMPSGAPYQQSGGSSD
PSVRMQYDANKDLYGGPQKGPGGSESYGPGQMPSGAVQDMYPRASPSGAMPGMGMGPGPR
SQYPYGPGYDRRPDHVMGPEGGMAPPGGQNNMGPSSGDPSMYSANRYPQQRPHGHESYGQ
QQYPHGPMPYGSHQPGMYPQQQGYKRPVGPEVMYGPPAKRHEGEAYGMQQYGGQQPGMYS
QYGGNYMGPERRPMQGQYPYPYSRDRMGATQGPQQHAMMSGGPPASSGASAEGPQLNMWH
PRTDMGYPGPYRGQLGQGPPYPGLGRGPGDDPEGRNSPDGQWPPGPPGQHQPPYPPHSSS
ASSMPPMASRQPTSSYQSNPAMANHISRAPSPSPFPRPMGGSGPLSPNNGGPYMASLKKA
GMPGSMPGSLGGGMSGQGILPLHRDISFPVGSVEATLPKLKARRRLTSKETGTPEAWRVM
MSLKSGLLAESTWALDTINILLYDDNTVSSFTLAQLPGFLELIVEYFRRCLISIFGILDE
YEVGTEGQRTLLGPIADQEEEPTVPELGSQLREEQRDNRPEEAEIEKPTANGSTEAAVPD
EKTEEPVEVTVKEEKVEGEESEVGATTDQSEPPQPEGPPEPRPKQASKYDKLPIKVEEKS
AAEDQVEERQGLSLPRGFSSGLLHWKAGGGDSTAHIQTHFEKRSEETDSKHTEERKVEEG
AVVEKTMTETATVDDMLSARPGSQSLSERNDLTGTFSFGEGAQTQSPILTLLEDEPRCWD
EAPLSTAEPWQDALARRCVCVSNIVRGLSFIPGNDNDMSRHPGLVLILGRLVLLHHLHPQ
RRRTPPSYQREEEQGRACSKDEWWWDCLSALRENTLVTLANISGQLDLSLYPESICLPIL
DGLLHWMVCPSAEAQDPFTTAGCSSSLTPQRLVLECLCKLSIQDNNVDLLLATPPFSRQE
KLYATLVRHVGERKSQVCREMAVAVLSNLAQGDPTAARAIALQKGSVGTLIGFLEDCVAM
AQHQQGPHSLLHPAPVPHPEPPSVNMMCRAAKALLAMAKVKENRPEFVLYESRLLDSSLS
SVLSSAVAAIMCEVLFKIGRSS
NT seq
6729 nt
NT seq
+upstream
nt +downstream
nt
atggccgcacaagtggcaacagccccaacatcaaatggtaagaaaaggtcgaatttagct
agtagcttgagtcaagatttgaaatctggcaagtctggagtagttggtggagctgtgctc
ggggtaggaaatgggactagcgttcatgctatgaataatgtagaacgccatgaactgaac
ccgaccagtagagctcgagcttctcctgcaaacaacgattcgaatccacgtgagaaggaa
agtagagattctagatcggcgtctttttcgacttcaaattctagcatggagacgggaatg
tttgttaatcataaagtgaaaaatgttggtggtgaagatactccatctctccaccacaca
cctcctcagcaacagccattcaaccaattccttcagcaccaacaacgccaaattcagaac
aacaaccagcagtcgctacatggagaaagtggaaaccgccaacatggggaaagtggaaac
cgccaacatggaggaaaagggaatgttgttttagggaatacagtcgaacgccatcagcaa
caggaaatgctgaataaaaatgaggacgaccaaccgagcaaaacggaagaccggttggac
agcaggtacgagcatgccagttcgggaccaacaaataacaacatcaacccgtcccaaagt
ggtaccagctcggtttcggagtttaatagttattatggaaatggtaaaggtgggccttgc
tttgatcaacatggcggacaacaaagccctgggtctgggataatgcattcggtacaacag
aatatggatcaagttcaacaaaactcccacgaagggtaccacaacaacccgtacaaccac
tacccgacttaccgacctggctacggtaatagtggatatgggatgatgagtccctctcgg
caggggaacaacatgatgggcctaggcagcaacacggctgctgctaatcatagcaaagct
gccatggccgctgcctcttctggtggtgctaatgttggagggtttcagagatttccaggg
caaactcagcaacatccttcgggggctaccccaactctaaaccagctactgacatccccg
agtcctatgatgcggggctatggcggtggctatcaagattacactaatccctctgctcaa
caacaacaatcaagcatggggctgaccaaagacataaacccccaatacggttcagttaca
catgtttggggaggacaacaaagaaatcaccctgccatgagccctggaaacaacggacaa
ggaagcggcagatcacaggtgccacccatggacaccatggccatgaagcgctctcagctc
tacggcataggcaacaacccttactcccagcaacaacagggcgggggcgggtcttaccct
ggccagccatacggatcgccttctcctcaccgctatccaatgggaatgcacgggaggggt
caggtgggcatgagtggaatgcagtatcctcaacagcagcagcagatggtagcccagtat
ggacagcagcatcaggggcagcagggtgggtactgccagcctcagggccagtccccgtac
ttcagccctccccagcaacagcccaccgcccccacacagcccccctacatgcagccacgc
ccaccaccaccacaacaggatgtgtcacaggagggctatggcaacaggggccagtctgct
atgacccctgggaagcccaaccatgaggagatgggcctcagccagcaggacagaccttcc
agtctacctgacctgtctggcaccatagatgaccttcctaccggcacagaggtggccgta
agctcagcggtcagtgcttcggggtccaccagcagccagggcgagcagagtaacccggcc
cagtctcctttctctccccatgtatccccgcgcctccccggcctgcgcagcggcccctcg
ccctcccccgtgggatcacctgttggctccagccaatcacgctccggcccaatctccccc
gccagcgtcccaggcacccagatggccccccagacccctgggaacatgtctgatgtgggc
tcccattccaccctgagccagtcccccatgtctcaggagagagggttcccacctgccatg
cagcggaacaccccaggcccccagcagtcgggccaggggccccccgtgtcccctcacccc
tccctggggggctccatgcacccgggctcctatcatcagcagcagcaggggggcccaggc
ccctcgtacggatcccagaccagccagtacggcccccaaggtaactaccccaggcccccg
aactacggcggggctcccagtgccaactacagcggccccggccctggcatgagcaacagt
ttgggcatgaacgccagcagccccatgcatggccagggccccggacagccctgtggctcc
atgcccgccgggcgaggcttgggtccaggggccagcgggcgcccctacccctgtgccacc
accaacaccatggcccccacctctcccagcatgccgcagcctgccggacagggtcagggc
atgagaccgcccctgcccaacgttaatcgcaagccgggccacgaggcaggccccggcccc
aacgccatgcagggtccaaacgctggttccaacccctctgcccagggccggcagggaatg
acccccatgccgcaccacccaggcatgaaccccgtgggccccggaggtgtgggccccagc
cctggaggcctctacagccagcagccaggggctaacacctctggaaggatgactccacag
gggccccacccgctctacaacgcacccccaccctcagggcccatgcagatgggaggagag
gggatggtgggtccccctgaccccaaacggaggcccccagagcagcacagggagggcaac
actcctgcccctgccgtcgaaccaccacctaaacccaagaagcccagcccggccaccatg
accaatgagaagatccgcatcctgtatgagatgggtggggaacccgagaggaggatgtgg
gtggaccgctacctggccttcatggaggagaggggcacgcccgtacccatgctgcctgcc
gtgggcaagaagcccctggacctatgccgcctctatctgtctgtccgagagataggaggc
ctggctatggtgaacaagagtaagaagtggagggagctgtctacccacctcaacgtgggc
acgtccagcagctccgccagctctctgaagaagcagtacatccattacctgtttgccttc
gagtgtaaagtggagcggggagaggagccgccgctggagatcccgggagaaaccaagaaa
caggcccaggcgcaccaggctaggatccagccgccctcaccagccaactccggctcccta
cagggaccccataccccccagtctacaggcagcagctccatgagtgagatgccagagggt
atgaagcgccccaccccagccaccacaccccacggacacatgaccccacagccaggaaac
aggaacagtggtggaatccgtgtccaggatcccttctcagagatcagtgaccctgccttc
cacaagcgagggcctatgccctctggcgccccctaccagcagagtggcggtagttcagac
ccctccgtgaggatgcagtacgatgccaacaaggacctctatggagggccccagaaaggg
ccagggggaagtgagtcctatggaccaggtcagatgcccagcggtgccgtgcaggatatg
tacccccgtgcttctccctcaggagccatgccagggatgggcatgggccccggtccgcgg
tcacagtacccctacgggcctggctatgacagaagaccagaccatgtgatgggtccagag
gggggtatggctccccctgggggtcagaacaatatgggaccttccagcggtgaccccagc
atgtactctgccaacagataccctcagcagagaccacatggacatgagagttacgggcag
cagcaataccctcacggccccatgccctacggttctcaccagcctggaatgtatccacag
caacagggctataagaggccagtaggaccagaggtcatgtacggtccccctgctaagcgc
catgagggtgaggcctacggcatgcagcagtacggaggacagcagccaggcatgtacagc
cagtacggagggaattacatggggccagagcgcaggcccatgcagggccagtacccttac
ccctacagccgagaccgcatgggggccacccaggggccacagcaacatgccatgatgagt
ggtgggccccctgcttcttccggagcctctgcagagggcccacagcttaacatgtggcac
cccaggacagacatgggctaccccgggccttaccgtggccaactgggccaggggccccct
taccctggtttgggacggggcccgggggatgacccagagggaaggaactccccagatggg
cagtggcctcccggacctccaggccagcaccagcccccgtatccaccccactcctcctct
gcctcctccatgcccccaatggcatccagacagcccacctcctcctaccaatccaacccc
gccatggccaaccacatctctagagcccccagcccctcgcccttcccccggcccatgggg
ggatccggacccctgtcccccaacaatgggggcccctacatggcatctctgaagaaggca
gggatgcccggatccatgccgggctcactcggcggagggatgtcagggcagggcattcta
cctctccacagagatatcagcttccctgtggggtcagtggaggccaccctgcccaaactc
aaggcccgacgcagacttacctccaaggagaccggaactccggaggcgtggcgcgtgatg
atgtcccttaagtcaggtctgctggcggagagcacatgggccctggacaccatcaacatc
ctgctgtatgacgacaacactgtgtcctccttcaccctcgcacagttgcctggcttcctg
gagctgatcgtggagtacttccgccggtgcctgatctccatctttgggatcctggatgag
tatgaggtgggcacagagggacagagaacgctgctaggaccaatcgcagaccaggaggaa
gagcctaccgttccagagctcggcagccaattacgcgaagagcagagggataacaggcca
gaagaggcggagatagagaagcccacagccaacggcagcacagaggcggcggtcccagac
gaaaagacggaggagcctgtcgaggtgactgtgaaagaggagaaggtagaaggggaagaa
tctgaggtgggggcaaccacggatcagtctgagcctccccagcccgaggggcccccagag
ccgaggcccaaacaggccagtaagtacgacaagctgcctatcaaggtggaggagaagagt
gcggcggaggaccaggtggaggagcgccagggactcagcctgcccaggggcttcagctcc
ggcctgctgcactggaaggctggagggggggactccacggcccacatccagacacacttc
gagaaacgcagcgaagagacagacagcaagcatacagaggagaggaaggtggaagaaggg
gccgttgtagagaagaccatgactgagacagccaccgtggacgatatgctgagtgcccga
ccaggctctcagtctctgtcagagaggaacgatcttactgggacgttctcctttggagaa
ggggcgcagacccaaagccctatcttgaccctgctggaggacgagcctcgctgctgggac
gaggcgcccctctccacggccgaaccctggcaggacgccctggcccgccgctgtgtctgc
gtctccaacatcgtccgcggcctctccttcatcccagggaacgacaacgacatgtcccgc
cacccaggcctggtgctgatcctggggcggctggtccttctgcatcacctgcacccccag
aggaggaggacgccccccagctaccagagagaggaggagcagggccgggcctgcagcaag
gacgagtggtggtgggactgtttgtcagccctcagggagaacactctggtcaccctggct
aacatctcaggtcaactagacctgtccctctacccagagagcatctgtctgcccatcctg
gacgggctgctccactggatggtgtgtccctctgccgaggcccaggaccccttcaccacg
gcgggctgctcctcctccctcaccccccagagattggtgctggagtgcctgtgcaagctg
agcatccaggacaacaacgtggacctcctgctggccacgccaccgttcagccgccaggag
aagctctacgccaccctggtgcgccacgtgggtgagcggaagtcccaggtgtgccgggag
atggcggtggctgtgctctctaacctggcgcagggggacccgacggcggcgcgtgccatc
gctctgcagaagggcagcgtgggaacactcatcggcttcctggaggactgcgtggccatg
gcccagcaccagcagggaccccacagcctgctacacccagcaccagtcccccaccccgaa
ccccccagcgttaacatgatgtgcagggccgccaaggctctgctggccatggccaaggtg
aaggagaaccggccagagtttgttctctacgagagcaggctactggatagctctctgtcc
tctgtgctgagctctgccgtggcggccatcatgtgtgaagtactgtttaagattggacgc
tcctcgtga
DBGET
integrated database retrieval system
