Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407038
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Entry
139407038 CDS
T10872
Name
(RefSeq) CASP8-associated protein 2-like isoform X1
KO
K25593
CASP8-associated protein 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139407038
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
139407038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding_7
SHE3
Myb_DNA-binding
YabA
MscS_porin
Motif
Other DBs
NCBI-GeneID:
139407038
NCBI-ProteinID:
XP_071006431
LinkDB
All DBs
Position
4:60676534..60687825
Genome browser
AA seq
2092 aa
AA seq
DB search
MEGDLMDEVYGDLSQDHQNTTAAFNEDSVDIYFGLESPKMNLNAGKHHSNAHIGSLRDER
NYTLLSPQNLKYMDLYEEIITEEQQDRESSYNELRTRFNAAQSQVDELMRRLQQTETQNT
TLNTENSRLKKNICALIKTAKMEVVRKDEEINRLSQSFRPRRGPVVHHQSQMNCLRNQIP
TKQNPTGQSQPSQPQVPTRLNPTGQSQPSQPQVPTRLNPTGQSQPSQPQVPARLNPTGPS
QLSQPQVPTRLNPTGPSQLNQPLIPTRQNLTGQPPPSQPPGPRQDCVVKDLSQLLCKDRD
VVHPLLPPTPSDATVFRPPLPDTTVLRPPLLDATVLRPSLPVTSKTAKGDSEAPVKRTVG
SSSQDSVNRHPTRELDPSDEPKQTKHRKGGGGNPRLSHSNEQRKYNSKSSRCPRLSDIEV
RRRSERAKNPTSDILHCTASSDRTSEGMSKDCAAYQSKGSSRHYQEFRCDKGDGNRHSRG
TKDISSNRKHAYLNQASVTERSSESFNRKGGTSPPRDHRRKEERRREDEVRKEKNTSKKS
GERKSTCTERRRAKESDRCSRDVSKDKTMDDSKVGGQKTGEKSELLPSEAKVAAKSSVEE
TGPNRKLSFMETLNLTLSPVKKPRRLAETKEQEGTPPEEVPEDQSAEDGGQPDLDKLLIL
DEINSSVVETDEVFEDPVVQPSSEIPMPSEPGSIDLRHTDKEPCQDANKGLAEATVAKKQ
PKCQLEVEDTIVQDVSEGRPELPEATVDQRTEPTTPEPLREVCVSAPVCAIVLRTPLKSR
PEECASVNKVSESEDFTTAAAVTATTVAGNCGNNSNTDTGLSSNGFTPDHSMENVVLITD
NWVCKPNSKTPSALVCESPAVETVTQVPPAAVCVGHPAVEGVPGKEPSESLQLPLPASVI
STSSLDVTAEVQDISKHGVSSTISMEGIPEICITSEIVEDATEIPLECEKERTVVEQGSP
LSGFEVSKVSSTTEEVAPSAQHNSGLSQTPKKSLDSEPSHTENEDVNVEPSSSIPLAHDE
DSMMLTLGSLPDAISPLTSPVRPMRKSHQPPCHSKPAYVKSLRKEFTSAAGDPNSKKLDV
NMENKNSGRSIASATQQDVDRASVCSSSPEDELEEGEILSEGEETPITPSSPAKMVRPTS
TVKSQHIPKSSPRLSKKLPEEKGNSKLLSKTLISPVGSPMSKARYKTVQPPLPKAALCTV
EEVMAMFVKIRYACRKKYMKLRSTFSKERFCGVMDMSLDSFTDFVDSVSFTKLCSQEDDL
KVKLKNNIMSVLSKLSNNGIVNRIFDQEPLNMKSKLWEFVNVQLDFLFKEIQTALRSVCK
SSNGNQSAGAEKRDLSLSKQPVKSPKQPVKSPKQPVKSPKQPVKSPKQPVKSPKQPVKSP
KQPVKSPKQPVKSPKQPVKSSVSTASKLKRPQGTVQKTNCVSRTSASKRPQEELTECVEP
NIKRTRAQTLPPCKTGLGRGKNIKMSFEEDEESEPQTSDHPLMQPPMQPPLQHGLEILSS
NSPSSAEKTVAYVRRLSQNGSLHDKSDFEILTEQQASNLTFNLVTDSQMGEIFKCLLQGS
DLLETSVSVGDNQGWPLGTPRKGERFRGVTTPSKVGTTTKVGTPSKVIATWSSISPSKFS
SPNSKVQIPLNPALLDESCMLEVPSSLPEDKMTSQSSVFSQSSYSILAEDLAVSLTIPSP
LKSDNHLSFLHPASVEPMSAPDSVISAHFSEDALMDGEDATEQDIHLALDTDNSSGASSG
GGRTREAPVNPLFHFKPHLPMQAVVMEKSNDHFIVRIRHANTSPDIKSNNSGVNFTNLGI
NCTNPGINFSNLGNNSTSLVVNPTCLGIKSTSQGVNSSSPGSVNSTYPGNNSTNPDTNSS
YPCVNSTSPQVNCTNPGIYPISADINPRAVSSPQTPPGEEQHGKDQAHPTGKTPSKTHFS
EASPPFYLSTSTETASALSSPCLTIIEDTPERDHSKGKTGKKRTRHHVEMKAKRPKKEVI
PEKIKHKKKSSKRAKGKETRSSKSERSKVTTPPQSTPSPNSLSAKNIIIRKGAVVVTWTR
DEDRDILLALKMKGASPDTFSSLSEKMNKTPAQIAERFSQLMKLFKKKKMAS
NT seq
6279 nt
NT seq
+upstream
nt +downstream
nt
atggagggggatttgatggatgaagtgtatggtgacctcagccaagaccaccaaaatacc
acagcagctttcaatgaagactctgtggatatttattttggtttagaaagtccaaagatg
aatttgaacgcaggtaaacatcactcaaacgcacacattggttctttacgagatgaaagg
aattacacactcctctcaccacagaatctgaaatatatggatttatatgaagaaatcata
acagaggaacagcaggatagagagtcttcctacaatgagttgaggacaagattcaatgca
gcacaaagccaagttgatgagttaatgagaaggttgcagcagactgaaacacagaataca
acgctgaacaccgagaacagccgcctgaagaagaacatctgtgcgctcatcaaaacagct
aaaatggaggttgtgcggaaggacgaggagataaataggttgagccaaagtttcaggcca
aggaggggtcctgtagttcaccatcaatctcagatgaactgcctgagaaatcaaattcca
accaaacaaaatcctacggggcagtcacaacctagccaaccacaagttccaacccgactg
aatcctacggggcagtcacaacctagccaaccacaagttccaacccgactgaatcctacg
gggcagtcacaacctagccaaccacaagttccagcccgactgaatcctacggggccgtct
caacttagccaaccacaagttccaaccagactgaatcctacggggccgtctcaacttaac
caaccactaattccaactagacagaatcttacagggcagcctccaccaagccaacccccg
ggtcctagacaggattgtgttgtaaaggatcttagccagctcctctgtaaagacagagat
gtggtccacccccttctccctccaaccccctctgatgcaacagttttccgaccacctctt
cctgatacaacagttctcagaccacctcttcttgatgcaacagttctcagaccatctctt
cctgtcacttcaaagaccgctaaaggagattcagaagctccagtgaaacgcactgttggt
agttccagccaggactctgtgaatagacaccctacacgtgaacttgacccgtcagacgag
ccaaaacaaaccaagcacagaaaaggcggaggtggaaatccgaggctgtcccactcaaat
gagcagcgaaaatataactccaagtcaagcagatgccctcgtctctcagatattgaggta
cgcaggagatcagagcgggctaaaaatccaacctctgacattttgcattgcactgcttcc
tctgaccgcacttccgaaggaatgtctaaagattgtgcagcctatcaatcaaaaggttct
agtcggcattatcaggagttcaggtgtgataagggtgatggtaataggcatagtagaggt
actaaagacatttcctctaacagaaagcatgcctatttgaaccaagccagtgtcactgaa
cgatccagtgaatcttttaatcgcaagggagggacaagtcctccaagggaccatcgaagg
aaagaggagagaagaagagaggatgaggtcagaaaagaaaagaatacatcaaaaaaatct
ggagaaagaaaaagcacttgtacagagagaagaagagcaaaggaaagtgaccgatgcagt
agggacgtcagtaaggacaagacaatggacgacagtaaagtcggggggcaaaagacaggt
gagaagtctgaattgcttccatctgaggctaaagtggctgcgaaaagctctgtagaggaa
actggtccaaacagaaagttaagtttcatggaaactctgaatcttaccctatcaccagtt
aaaaaaccaagacggcttgctgaaaccaaggaacaggagggcacaccacctgaggaagtt
cctgaagaccagtcagcggaagacggtggacagcctgatctagacaagttactcatctta
gacgaaatcaacagcagtgtggtagagaccgacgaggtcttcgaggacccagtggtacag
ccctcttcagaaatcccaatgccttcggaacctggaagtattgaccttagacatacagac
aaagaaccttgtcaggatgctaacaaaggtctggctgaggccacagtggccaaaaagcaa
cctaagtgccagttagaagtggaagacactattgtccaagatgtctctgaaggtaggcct
gagctgccggaggccacagtggatcagaggactgaacccaccacaccagaacctctcagg
gaggtttgtgtttcagctccagtctgtgccattgttttgagaactccactgaaaagcaga
cctgaagaatgtgcctctgtgaataaagtgagtgagtctgaggattttactactgctgct
gctgtcactgctactactgtggctgggaattgtggaaacaattcaaatactgacactggc
ctatcgtctaacggatttacccctgaccattcaatggaaaatgtagttcttattacggac
aattgggtgtgtaagccaaacagtaaaactcccagtgctttggtctgtgaaagtccagct
gttgaaactgtgacacaagttccacccgctgctgtctgcgtgggacatcctgctgttgaa
ggtgttccaggaaaagaaccatcggaatctctgcaattgccactgcctgcctctgttatt
tcaacctctagtttagatgtgacagcagaggtgcaagatatttccaagcatggtgtttct
agtacgattagcatggagggaattccagagatctgcattacatctgagatcgttgaagat
gccaccgagatacctctggagtgtgagaaagagaggactgttgtggaacaaggttcaccg
ttgagcggttttgaagtgtctaaggtgagcagcacaacggaagaggttgcaccatcagca
cagcacaacagtggcttgtcacaaacgccaaagaagtccctcgattctgagccaagtcac
acagagaatgaggacgtgaatgttgagccctctagctccattccattggcccatgatgag
gactcgatgatgcttacactgggcagccttccagatgccatcagcccactcacaagccca
gtccgtccaatgaggaaaagccatcagccgccatgtcacagcaaacctgcttacgtcaag
agtcttcgcaaagagtttaccagtgctgctggggatcccaattcaaagaagttggatgtg
aatatggagaacaagaattctggccgctccattgcaagtgctacacaacaagatgtggat
cgggcttctgtctgttcttccagccctgaggatgaattggaagagggtgaaattcttagt
gaaggggaagaaacgccaatcacgccaagttctccagccaaaatggttaggcccacaagc
acggttaaaagtcaacacattcccaagtcatcccctagactttccaagaagttgcctgaa
gagaaagggaattctaaactcttaagtaaaaccttgatttcaccagttggaagccccatg
tcaaaagctcgctataaaacggttcaacctccgttacccaaagctgccttgtgtaccgtg
gaggaggttatggccatgtttgtaaagatccgctatgcgtgcaggaaaaagtacatgaag
cttcgttcaaccttctctaaggaacgcttctgcggtgttatggacatgtcccttgactct
tttacagactttgttgatagtgtcagctttactaaactatgcagccaagaagatgacctc
aaagtgaaactgaagaacaacataatgtctgttttgagtaagttatcaaacaatggcatt
gtcaaccgcatctttgaccaggaaccacttaatatgaagtcgaaactgtgggaatttgtg
aatgtgcagttagacttcttattcaaggaaattcagactgctctgagaagtgtttgcaaa
tcctcaaatggaaaccagtctgcaggagctgaaaaaagggacttgagtctctccaagcag
ccagtgaagtctcccaagcagccagtgaagtctcccaagcagccagtgaagtctcccaag
cagccagtgaagtctcccaagcagccagtgaagtctcccaagcagccagtgaagtctccc
aagcagccagtgaagtctcccaagcagccagtgaagtcccccaagcagccagtgaagtca
tcggtgtccacagcctctaaacttaaaagaccgcagggaacggtacaaaaaactaattgt
gtgtccagaacatctgcaagtaaaagaccgcaagaggaattaacagaatgtgttgaaccc
aacataaaaagaaccagggctcagactctccccccttgcaaaaccggtcttggaagaggc
aaaaatattaaaatgtcatttgaagaagatgaggaatcagagcctcaaacctcagatcat
cctcttatgcaacctccaatgcaacctcctttgcaacacgggttagagatcttatcatca
aacagcccttcatctgctgagaaaacagttgcctatgttcgccggctgtctcaaaatggc
tcactccatgacaagtctgacttcgaaatcctcacagaacagcaagcctccaacctaaca
ttcaacctggtgacagactcccagatgggagagatcttcaagtgtcttttacaagggtct
gatctgctagaaactagtgtctcagttggggacaatcagggctggcctcttggtactcct
cggaaaggagagcgcttccgaggcgttaccaccccaagcaaagttggtaccacaaccaaa
gttggtactccctctaaagtcattgccacatggtcttctatttcaccttccaagttttcc
tctccaaattcaaaagtccaaattccactaaatccagctttgttggatgagagttgcatg
ttagaggtgccctccagcctaccagaagacaaaatgacatcgcagtccagtgtgttctcg
cagagctcttattccattttggcagaagatctggctgtctccctcacaattccttcgcct
ctcaagtctgacaatcacctcagcttcttgcacccagccagcgtggagcccatgtctgct
ccagatagtgtcatcagtgcacatttcagtgaggatgctcttatggatggggaagacgct
acagagcaggacattcaccttgccctggacacggacaactccagcggtgcgtcaagcggt
ggtggcaggactagggaggctcctgttaaccccctgtttcacttcaagcctcacttgccc
atgcaggcagtagtgatggagaagtcaaatgatcatttcattgtgaggatacggcatgca
aacaccagcccagacatcaaatccaacaactcaggtgtcaacttcaccaacctaggcatc
aactgcaccaacccaggcatcaacttctccaacctaggcaacaactccaccagcctagtg
gtcaaccccacatgcctaggaattaaatcaacaagccaaggagtcaactcttcaagccca
ggaagtgtaaactctacctacccaggaaataactccaccaacccagacacaaactcaagc
tacccatgtgtcaactccacaagcccacaagtcaactgcaccaacccaggcatctacccc
ataagtgcagacatcaatccaagggctgtctcaagccctcaaacaccaccaggagaagaa
caacatggcaaagaccaagctcatcccacagggaaaactccttctaaaacccatttttca
gaggccagtcctcctttctacctttccacaagcaccgaaacagcatctgcgctatcttca
ccatgcctcaccatcatagaagacacaccggagagggaccacagcaagggtaagacgggg
aaaaagcggacaaggcaccacgtcgaaatgaaagcaaagcggcctaaaaaggaggtgatc
cctgagaagatcaagcataaaaagaagtcctcaaaaagggccaaaggaaaggagactaga
agctccaagagcgagagaagtaaagtcactactccaccccaatctaccccatcacccaac
agcctgtctgccaagaatatcatcataagaaagggtgcagtggtggtgacttggacaagg
gatgaagaccgagatattctcctcgcgctgaagatgaaaggtgcctctccagatactttc
tcttccctatcggagaagatgaacaagacacccgctcagattgcagagagattttcccag
ctgatgaagctttttaagaagaagaagatggcaagttga
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integrated database retrieval system
