Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407231
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Entry
139407231 CDS
T10872
Name
(RefSeq) tubby-related protein 4a
KO
K24720
tubby-related protein 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
Other domain-containing proteins
Tubby family proteins
139407231
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139407231
NCBI-ProteinID:
XP_071006921
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Position
4:71654242..71704778
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AA seq
1827 aa
AA seq
DB search
MFAAVEHGPVLCSDSNILCLSWKGRVPKSEKEKPVCRRRYYEEGWLATGNGRGVVGVTFT
SSHCRRDRTTPQRINFNLRGHNSEVVLVRWNEPFQKLATCDTDGGIFVWIQYEGRWSVEL
VNDRGAQVSDFTWSHDGTQALISYRDGFVLVGSVSGQRHWSSEINLESQITCGIWTPDDQ
QVLFGTADGQVIVMDCHGRMLAHILLHESDGIVSMSWNYPSFLVEDSSESDTDSDDYTPP
QVQRLKPLLTVSFTSGDISLMNNYDDLSPTLIHTGLKDVVVQWCSQGDLLAVAGMERAVL
PPDSSCLPPTRNAVVKFYNVCGEHIYTLDTPAQRPITTLCWGHRDSRLFLACGPVLYVVR
VEHRVASLQLLCQQGIAGALREEKDVAKLTMPSRLCSYVTTAFTPTIKPPIPDPNNMRDF
VSYPTAGNERLHCTMKRTEDNPEVGGPCYTLYLEYLGGLVPILKGRRISKLRPEFVIMDP
KTDGKADEVYGNSLISSMIDSCNCSDSSDIELSDDWVGKKSPKISRGSKSPKLPRDLVCP
FTNRINIDPRKSPKLSRATQEISRSPRLPIRKPSIGSPSLTRREFPLDDITQHNYLAQVT
SNIWGTKFKIVGLATFLPTNLGAVIYKTSLLHLQPRQMTIYLPEVRKISMDYINLPVFSP
NVFSEDEDDLPVTGASGVADDNPPCTVNIPIAPIHSPAQAMSPTQSIGLVQSLLANQNVQ
LDVLSNPTAISSVASAGAGGSSDQGQDTILTAQYTVPSRYSSPGQVIFGGLEMSRLLVGP
PPSHHHQQQQQSHPQSHQQPLQQHHQQQQIQHQQQQQLQHHHQQLQQQQQRLAQQHHQQQ
LAQQHQQQIQQQQMLQHQQMQQQQIQQQQQHIQQQIQHMQQQQQHIQQQHQQQLQHQQQL
QQQLQQQQHTQQLQQQQQQIQQHMQQQQHQQHHQMQQQQQIQQHHQMQQQLQISVPSQVS
GAAVHQLQQGALQIPVPHPAGGLVAERRVSVEHEHLLKIKPTRSAPQLAEGDTVVFSAPL
ELSKMNPPPPYPGTVAAAAASASAAAANAASGQAGGSNGTPPPVDLCLKKGEFSLYPPGQ
QAAQYPTPLGYERITTFDSRGNVEEVCRPRTRLVCNQNIYTLQVPGSSATLRVTSSSSST
DGKKIQLPYASATLNRLTVPRYSIPSGDPPPYPDTANQNTTGGRSTGQRLDSSLIHATLR
RNSREAALKVSQMLDPQRTLPTKAKSQNAALASSYQQRVPKALYTCSQCSSNSSGLSSAA
SSAPSGTANGIAGGTIIRQDFPPGNGAPHSTVIVHSNSASPLVSQSSYNLDGSGNGGGGG
NRDRADYVNSAFTEDEALSQSLRHLALGGADVSGLTVKRPPPYQWDPATTEEVWVPQERT
GTLSSAGPTGPHKPPPLILSPAQHLDISRLPFILSPKSPTSPSAASFQAAAAAAGYQISL
QYAPGTTYSGPQQQPMPGSPRLCSPKEVVAPVPFNQQDATLVLPPGYPANLSNLACCPLP
PMYPGGSSCAGLPIPPIALHTPWGTYNPCPPMPSPSGTLPPMPPKHSQMMVDKSVLSPPP
PPPPLPPPPPAELQLQGHGGSPEAMAMEAGEGFQEVLSLNESPVPSSAEKFGKKNRKRAD
GRAEEANAPAIAEGGKSKKEGRALGDFNSLISSPRLGSREKKKPKGQKEQQLKAKKLNKA
PTNSEFQDSSESEPELFISGDELLNQCQSGKKGWKSKRSLRAASELEEIKCRKANEKEDR
GLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQVMQFGRIDGNA
YILDFQYPFSAVQAFAVALANVTQRLK
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atgttcgccgcagtggagcatggccccgtcctgtgcagcgactccaacatactctgcctg
tcatggaagggccgggtacccaagagcgagaaggagaagccggtgtgccggcggcgctac
tatgaggagggctggcttgccacagggaatgggagaggggttgtcggggtaacgttcaca
tccagccactgcagaagggatcggactaccccacagaggatcaacttcaacctgagagga
cacaatagtgaggtggtcctggtgcgatggaacgagccctttcagaaactggccacttgt
gacacagacggagggatctttgtgtggatccagtacgagggccgctggtctgtggagctg
gtcaacgatcgcggggctcaggtgagtgacttcacctggtctcatgacggtacccaggct
ctcatctcttaccgtgatggctttgtcctggtgggctcggtcagcggccagagacactgg
tcatcagagatcaacctggagagccagatcacctgtggtatctggacccccgatgaccag
caggtattgtttggtactgcggacggccaggtgattgtgatggactgccacgggcgcatg
ctggcccacatcctgctgcacgagtcagacggcattgtcagcatgtcatggaactacccc
agcttcctggtggaggacagcagcgagagcgacacagactctgatgactacacaccacca
caagtccaacgtttgaagcctctgctgacggtcagcttcacctctggagacatcagcctg
atgaacaactatgatgacctctctcccactcttatccacactggcctaaaagatgtggta
gtccagtggtgttctcagggggatctcctggccgtggctgggatggagagagctgtcttg
ccccccgactcctcctgtctacctcccaccagaaacgccgtcgtcaagttctacaacgtc
tgcggagaacacatctacacactggacacgcctgcacaacgtcccatcaccacgctgtgc
tggggtcaccgggactctcgtctgttcttggcttgtggcccggtactctacgtggtgcgg
gtggagcaccgggtggccagcctgcagctgctgtgccagcagggcattgcaggggcgctc
cgggaggagaaggacgtggcaaagctcaccatgccctctcgtctctgttcttacgtcacc
acagccttcacacccaccatcaagccccccattccagaccccaacaatatgcgtgacttt
gtgagttacccgacggcggggaacgagcggctgcactgcaccatgaagcggacggaggac
aaccctgaggtgggcgggccctgctacaccctctacctggagtacctagggggcttggtg
cccatcctcaagggccgacgcatcagcaagctccgtcccgagttcgtgatcatggacccc
aagacggacggcaaagcagatgaggtgtatgggaacagtctgatctcgtcgatgatagac
agctgtaactgttcagactccagtgatatagagctgagtgacgactgggtcggcaagaaa
tccccaaagatatccagaggcagcaagtctcccaaacttcccagagacttagtctgtccc
tttaccaacagaatcaatattgaccccagaaagtcccccaaactgtcccgcgctacccag
gagatctcgcggtcgccacggttacccatccggaagccgtccattgggtccccaagtctc
acccgcagagagttccccttagatgacatcacacagcataactaccttgctcaggtcaca
tccaacatttgggggacaaagtttaagattgtgggacttgccaccttcttgccaaccaat
cttggtgcagtgatctacaagacaagtctgctccaccttcagcccagacagatgaccatc
tacctgccggaggtgcgtaagatctctatggactacatcaacctgcctgtgttcagcccc
aacgtcttcagtgaggatgaggatgacctgccagtcaccggggcctcgggcgtggccgac
gacaaccctccctgcactgtcaacatccccattgcccccatccacagtcccgcccaggcc
atgtcccccacccagagcatcggcctagtccagtccctcctagccaatcagaacgtccag
ctggacgtcctatccaatcccacggccatctcctccgtggcttctgcaggggcagggggg
tcgtctgaccagggccaggacaccatcctgactgcccagtacacggttcccagcaggtac
tccagtcctggacaggtcatctttggagggctggagatgagccggcttctggttgggcct
cctccctctcatcaccaccaacaacaacaacaaagccatccacagagccatcaacaacca
ctgcagcaacatcatcagcaacaacaaattcagcatcaacaacaacagcagcttcagcat
caccatcaacagctacaacaacagcaacaacgactagcgcagcaacatcaccaacagcaa
ctggcacagcaacatcaacagcagatccagcagcagcagatgctgcaacaccaacagatg
cagcagcagcagatccagcagcaacagcaacacattcaacagcagatccagcacatgcag
caacagcagcagcacatccaacaacaacaccaacaacagctccagcaccaacaacagctc
cagcagcagttacagcagcagcaacacacacagcagctgcagcaacagcagcaacagata
cagcagcatatgcaacaacaacagcatcagcagcaccatcagatgcagcaacagcagcag
atacaacagcaccatcagatgcagcaacagctccagatatctgtcccctctcaggtgtca
ggtgcagcagtgcatcagctccaacagggtgcgctccagatccctgtcccccaccctgca
ggggggctggtggctgagagaagggtcagtgtggaacatgagcacctgctgaagatcaaa
cccacccgctctgccccccagctggctgagggggacacggtggtgttcagcgcccctctg
gagctcagcaagatgaaccccccgcccccctaccctgggacggtggccgcagctgcagcc
tctgcctctgctgcagcagccaacgccgcctctggacaggctgggggcagtaacggcacc
ccgccgccagtggacctgtgcctgaagaagggcgagttctccctatatcctcctggccag
caggcggcacagtacccaacgccgctaggctatgagcggataactacgtttgacagcagg
ggtaacgtggaagaggtgtgccggcctcgaacgcggcttgtctgcaaccagaacatttac
acgctccaggtcccgggaagctcagcaaccctccgggttacctcctcttcttcctcaaca
gacgggaagaagattcagctgccctacgcctcggcaaccctcaacaggctcaccgttccc
cgctattccatacccagtggagatccgcccccctaccccgacacagccaatcagaacacc
acaggggggaggagcaccggacagaggctggacagcagtctgatccatgccacactcagg
cggaacagccgagaggccgctctcaaagtttcccagatgctggaccctcagaggaccctg
cccactaaagccaaatcccaaaacgctgcactggcgtcttcctaccaacaaagggtgccc
aaagccctgtacacctgcagtcagtgcagtagtaacagcagtgggcttagcagtgcagcc
agcagtgctcccagtgggactgcgaatggaatcgcaggaggtacaatcattagacaggat
tttcctccagggaatggagctcctcacagcacggtgatcgtccattccaacagcgcttct
cccctagtctctcaatcctcatacaacctggatggctctgggaatggaggaggaggtggg
aacagagacagggctgactatgtgaactcagccttcacagaggatgaagcactgagtcag
tcattgaggcatctggcactagggggtgcagatgtgtctggactgacagtcaagaggcca
ccgccataccagtgggacccagccaccactgaggaggtgtgggtgccccaggaacggacc
ggtactctgagctctgctggccccaccggaccccacaaaccacccccgcttatcctcagc
ccagcccagcacctcgacatctcccggctgcctttcatcctctcccccaagtcccccacc
agccccagtgctgcctctttccaggctgccgctgcagctgcaggttaccagatctccctt
cagtacgctcctggcacaacctatagtgggccccagcagcagcccatgccaggctctccc
cgtctctgctcccctaaggaggtggtggccccggtccctttcaaccagcaggatgccacc
ctggtcctcccacctggctatccagccaacctgtctaacctggcctgctgccccctccct
ccaatgtacccggggggaagctcctgtgccgggctccccatcccccccattgccctacac
accccctggggcacctacaacccctgcccccccatgcccagcccctcggggacactgccc
cccatgccccccaagcactctcagatgatggttgacaagtcagtcctctctccccctcct
cccccaccgcctctccctccaccacccccagcagagctgcagctgcagggtcatggtggc
tcaccagaggccatggcaatggaggccggagagggcttccaggaggtcctctccctcaac
gagagccccgtgcccagcagtgctgagaagtttggcaagaagaaccgcaagcgggcagat
ggcagggctgaggaggccaatgcaccggccatcgctgagggaggcaaatccaagaaggaa
ggccgggccctgggtgacttcaactctctgatctccagcccgcggctgggcagcagggaa
aagaagaagcccaaaggccagaaggagcagcagctgaaggctaagaagctgaacaaggct
cccacaaacagcgaatttcaggacagctcagagagtgaacctgagctcttcatcagcggg
gacgagctgctcaaccagtgccagagcggcaagaagggctggaagagcaagaggagccta
cgggcggccagcgagctagaggagatcaagtgccgcaaggccaatgagaaggaggaccgc
gggttgggaagccagggctttgtttatgtgatggccaacaagcagccactgtggaatgag
gccactcaggtctaccagctggactttggaggacgtgtcacacaggagtcggccaagaac
ttccagattgaactggaggggagacaggtgatgcagtttggcaggattgacggcaacgcc
tacatcctggacttccagtacccgttctctgctgttcaagccttcgcagtggctcttgct
aatgttactcaacgcctcaaatga
DBGET
integrated database retrieval system
