Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407236
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Entry
139407236 CDS
T10872
Name
(RefSeq) estrogen receptor isoform X1
KO
K08550
estrogen receptor alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04081 Hormone signaling
139407236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139407236
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ocla03310
]
139407236
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 estrogen receptor-like
139407236
Nuclear receptors [BR:
ocla03310
]
3. Estrogen like
3A. Estrogen receptor
139407236
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GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Oest_recep
Motif
Other DBs
NCBI-GeneID:
139407236
NCBI-ProteinID:
XP_071006928
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Position
4:complement(71936686..71963397)
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AA seq
622 aa
AA seq
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MLVRQSHTQISKPLGAPLRSRTTLESHVISPPKLSPQQPTTPNSNMYPEETRGGGGAAAF
NYLDGGYDYTAPAQGPAPLYYSTTPQDAHGPPSDGSMQSLGSSPTGPLVFVSSSPQLSPQ
LSPFLHPPSHHGLPSQSYYLETSSTPLYRSSVVTNQLSASEEKLCIPSDRQQTYSAAGSG
VRLFEMANETRYCAVCSDFASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTMDRN
RRKSCQACRLRKCYEVGMVKGGLRKDRGGRVLRKDKRYCGPAGDREKPYGDLEHRTAPPQ
DGGRNSSSSLNGGGGWRGPRITMPPEQVLFLLQGAEPPALCSRQKVARPYTEVTMMTLLT
SMADKELVHMIAWAKKVPGFQELSLHDQVQLLESSWLEVLMIGLIWRSIHCPGKLIFAQD
LILDRSEGDCVEGMAEIFDMLLATVSRFRMLKLKPEEFVCLKAIILLNSGAFSFCSNSVE
SLHNSSAVESMLDNITDALIHHISHSGASVQQQPRRQAQLLLLLSHIRHMSNKGMEHLYS
IKCKNKVPLYDLLLEMLDGHRLQSPGKVAQAGEQTEGPSTTTTTSTGSSIGPMRGSQDTH
IRSPGSGVLQYGSPSSDQMPIP
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgctggtcagacagtcccatacgcagatttccaaacctctcggagctcctctcagatcc
cgaacgaccctggagagccacgtcatctcccccccaaaactctcaccacagcagccgacc
acccccaacagcaacatgtaccctgaggagacacgcggaggtggtggggcggccgccttt
aactacctggacggagggtatgactacacagcccctgcccaaggcccggcccctctctat
tactccaccaccccccaggatgcccacggacccccttcggatggcagcatgcagtccctg
ggcagcagtcccaccggcccactggtgtttgtgtcctccagcccccagctcagcccccag
ctcagccccttcctccaccccccaagccaccatggtctccccagccagtcatactacctg
gagacctcgtccacacccttatataggtcgagtgtggtaaccaatcagctgtcagcgtca
gaggagaagctctgcatcccctccgataggcagcagacgtacagtgcagcagggtcaggg
gtcaggttgtttgagatggccaacgagacgaggtactgtgcggtctgcagcgactttgcc
tctgggtaccactacggagtttggtcctgcgagggctgcaaagccttcttcaaaaggagc
atccaaggtcacaatgactacatgtgccctgcgactaaccagtgtacaatggacaggaat
cgtaggaagagctgccaggcatgccgcctcagaaagtgttatgaagtggggatggtgaaa
ggaggcttgcgtaaggaccgcggtgggcgggttctcaggaaggataagcggtattgtggc
cctgctggtgacagagagaaaccctacggtgacctggagcacaggactgcgccccctcag
gacgggggtaggaacagcagcagcagtctcaatggtggtggaggatggcgtgggcccaga
atcaccatgcctcctgaacaggtgctgttcctgctgcagggggcagagcctccggccctg
tgttctcgtcagaaggtggcccgcccctacacagaggtcaccatgatgaccctgctcacc
agcatggctgacaaggagctggtgcacatgatcgcttgggctaagaaagtaccaggtttc
caggagctgtctctccatgaccaggtgcagctgctggagagttcctggctggaggtgctg
atgatcggactcatatggcggtccatccactgccctgggaaactcatcttcgcccaggac
ctcatactggacaggagtgaaggggactgtgtggagggtatggctgagatcttcgacatg
ctcctggccactgtgtctcgcttccgcatgcttaaactgaagcctgaggagtttgtgtgc
ctcaaagccatcatcttgctcaactctggtgccttctccttctgttccaactctgtggag
tccctccacaacagctcggcagtggaaagcatgctagacaacatcaccgacgccctcatc
caccacatcagccattcaggagcctctgtgcagcagcagcccagacggcaggcccagctc
ctgctcctgctctcacacatcagacatatgagcaacaaaggcatggagcacctttacagc
ataaaatgtaagaacaaagtgcctctgtacgacctgctcctggagatgctggacggtcac
cggctccaatccccaggcaaagtggcccaagctggggaacagaccgagggcccctctacc
accactaccacctccacaggctccagcatagggccgatgcgaggcagccaggatacccac
atcagaagccctggttccggggtactccagtatggctcccccagctcagaccagatgccc
attccgtga
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