Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407383
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Entry
139407383 CDS
T10872
Name
(RefSeq) SNW domain-containing protein 1-like
KO
K06063
SNW domain-containing protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
ocla04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139407383
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
139407383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139407383
Spliceosome [BR:
ocla03041
]
Complex B
Other components
Prp19-related factors
139407383
Complex C
139407383
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SKIP_SNW
Motif
Other DBs
NCBI-GeneID:
139407383
NCBI-ProteinID:
XP_071007224
LinkDB
All DBs
Position
4:84602252..84619423
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AA seq
537 aa
AA seq
DB search
MSLTSFLPAPTQLSQDQLESEERARAQRSHSTALVSSRREPPPYGYRKSWVPRSLEDFGD
GGAFPEIHVAQFPLEMGRKKKTSNALAVQVDAEGKIKYDAIARQGQGKDKVIFSKYTDLL
PKEVLNDDAPELQKPDEEAVKELTEKTRDALMKQVSQKIAAAMPVRAADKQAPAQYIRYT
PSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPPSPPAPVMHSPSRKMTVK
EQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIADRKARE
AVEMRAQVEKKMAQKEKEKKEEKLRELAQMARDRRAGIKGHGGDKGGEDGEARERDEIRH
DRRKERQHDRNISRAAPDKRSKLQRDQDRDVSELIALGQPNPRASSEAQYDQRLFNQSKG
MDSGFAGGEDEMYNVYDQPFRRGSDMAQNIYRPTKSSDKDMYGDDLDTLMQSSKFVPDRE
FSGTDHGPRRDGPVQFEEDPFGLDKFLEEAKQHGGSKRPSTSRGSKDYDHDKKRRKE
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttacgagctttctacctgcgccgacccagctgtctcaggaccagttggagtca
gaggagagagcccgggcacagaggtcccactccaccgccctggtctcctcccgcagagaa
ccccctccctacggctacaggaagagctgggtgccacgctctctggaggactttggagat
ggcggtgccttccctgagatccacgtggcccagttccctctggagatgggcaggaagaaa
aagacatccaatgccctggcagttcaggtggatgctgagggcaagatcaaatacgatgcc
atcgccagacagggacagggcaaggacaaggtgatcttcagtaagtacacagacctgctt
cctaaggaagtgctgaacgatgatgctcctgagctgcagaagccggacgaggaggctgtc
aaagagctgacggagaagacccgcgatgctctgatgaagcaggtctcccagaagatcgct
gcagccatgcctgtgagggcagcagacaaacaggcccctgcacagtacatcaggtacact
ccttcccagcagggtgtggccttcaactccggggccaaacagagggtcatccgtatggtg
gagatgcagaaggaccccatggagcccccgcgcttcaagatcaacaagaagattcctcgt
ggtcctccctctcctcctgcaccagtcatgcactctcccagcagaaagatgactgtcaag
gagcaacaggagtggaagattcccccctgtatttcaaactggaagaacgcaaagggttac
accatcccactggacaagcgtctggctgcggatggtagaggactgcagaccgttcacatc
aacgagaactttgccaaactggccgaggcgctctacattgctgacagaaaggccagagag
gctgtggaaatgagagcccaggtggagaagaagatggcccagaaagagaaggagaagaag
gaggagaagctcagagagctggctcagatggcccgagaccgcagggcagggatcaaaggt
cacggaggggacaaaggtggagaggacggtgaggccagagagcgtgacgagatccgtcat
gacaggaggaaagagagacagcacgacaggaacatctccagagctgcccctgataagagg
tcgaagctgcagagagaccaggacagagatgtcagtgagctgatcgctctgggccagccc
aaccctagagcctccagcgaggctcagtacgaccagagactgtttaaccagagcaagggt
atggacagtggttttgcaggtggggaggatgagatgtacaacgtgtatgaccagccgttc
aggagaggcagcgatatggcccagaacatctacaggcccaccaagagctctgacaaggac
atgtatggagacgacctggacacactcatgcagagcagcaagtttgttccggaccgtgag
ttctctggtacggaccacggtcctcgtcgtgacggccctgtccagtttgaggaggatccg
ttcggtctggacaagtttttagaggaggcgaagcaacacggcggctccaagagaccctcc
accagtagaggctccaaggactacgaccacgacaagaaacgcaggaaggagtga
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