Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407402
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Entry
139407402 CDS
T10872
Name
(RefSeq) serine/arginine-rich splicing factor 5-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139407402
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139407402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139407402
Spliceosome [BR:
ocla03041
]
Common components
Common spliceosomal components
SR proteins
139407402
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
Nup35_RRM_2
RRM_5
SET_assoc
Motif
Other DBs
NCBI-GeneID:
139407402
NCBI-ProteinID:
XP_071007258
LinkDB
All DBs
Position
4:86346803..86354577
Genome browser
AA seq
325 aa
AA seq
DB search
MSGCRIFVGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGK
ELCNERVTIEHARVRLRGGRGRGGDRGGGGGGGGGGRFPDRYGRGSQDSRRTNQPSGPPA
GRNPPPMRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYSDL
KNALEKLSGKEINGRKIKLIEAAKKRGSRSRSRSESSSRSRSRSRNRSPSRSRTPRRSRS
HSPKARSPKRDYKRSRSRSHSGSPAPRAAAPGSPPPRAKETSSSKRPSKPSKSASPNSTP
PAQRAPSRSPSRSRGSRSPSTDSRH
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgagtggctgccgcatatttgtcggccggttgaacccgtccgccagagagaaggacgtg
gagagattcttcaaaggatacggccgcatccgagacatcgacctcaagaggggctttggt
tttgtggagtttgatgatcctagggatgctgaggatgcagtttatgagttggacggcaag
gagctctgcaatgagagggtgaccattgagcatgctcgtgtgcgcctgcgtggtgggcga
ggacgtggtggtgacagagggggaggaggaggaggaggaggaggaggccgcttcccagat
cgctatggccgtggctcccaggatagtcggaggaccaaccaaccaagtggaccaccggca
ggtaggaaccccccaccgatgcgcacggagaaccgtctcatcgtggagaacctgtcatct
cgcgtcagctggcaggacctgaaggatttcatgagacaggctggggaagtcacctttgca
gacgcacaccgccccaagctcaacgaaggagtggttgagttcgcttcttacagcgacctg
aaaaacgcccttgagaagctgtctggcaaggagatcaatggaaggaaaatcaaactgatc
gaggcagctaagaagaggggttcaaggagtcgttcccgctctgagagctcttctcgttct
cgctcccgttcccgtaaccgttccccgtcccgctccaggacccctcgtcgttccaggtcc
cactcccccaaagcccgctcccccaagagggactacaaacgctctcgttctcgttcccac
agcggctccccagcgccccgtgctgctgcccctggctccccacccccgagggccaaagag
acctcttcctctaaacgaccctctaagcccagcaagtctgcctcccccaactccactccc
cctgcacagcgtgcaccttccaggtctccttccaggtctcgtggctctcgctccccgtct
acggacagccgccactga
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