Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407409
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Entry
139407409 CDS
T10872
Name
(RefSeq) chromatin-remodeling ATPase INO80 isoform X1
KO
K11665
chromatin-remodeling ATPase INO80 [EC:5.6.2.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139407409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139407409
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
139407409
INO80 complex (yeast)
139407409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DBINO
Helicase_C
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
139407409
NCBI-ProteinID:
XP_071007269
LinkDB
All DBs
Position
4:87066039..87163750
Genome browser
AA seq
1596 aa
AA seq
DB search
MASGAEQAEADDGAAWSSSGLAKPLHLQHLERSLRLDSFLRQTASVFNRDLSSDDSDDDG
LGEGPSLRPVNQHAALAIKEESCDLDEEGLVTEGTILNGTPSQEHKEDKASLYNFSKLKK
SRKWLKSILLSDDTSESDTEDSDFSLSREELQDMLRLHQFTREHQNKFHNDRELQQYQYY
STGLLSSHDPFHEQQRHLLGPKKKKIKEEKKFKGKLKKGKRKKKRGEGEFSGEGRPHVTK
IFAKFSHDAPLPMLKKKHLTVEQLNARRRKVWLTIAKKECPKAFKQKASAKNFVLTNAKK
LAHQCMREVRRAAIQAQKNCKETLPRARRLTKEMTLYWKKYEKVEKEHRKRAEKEALEQR
KLDEELREAKRQQRKLNFLITQTELYAHFMGGKGPGEEDGGEEDILNKLDDTNSHRQMTI
GERLTVNVGQEDYDSEYYKSQALRKAKEAYEIHQARTRLFDEEAKDSRCASLHQASGGSG
SGFGESYSLSNPSIQAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLG
KTVQSIALLGHLAERDNIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVI
RKFWSQKTLYTQNAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSTSVRWKIL
LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAID
ENQLSRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTCRQRLLYRALRNKISIEDLL
QSSMGSSQQAHSTTSSLMNLVMQFRKVCNHPDLFERQETRSPFHMSLRPYVMSKFLYRHG
LTHTTTHTHSRNKVLQVLLSPFSPDHIHQSLFHRKGDQEGSCFSFLRFINVSPAEMFNVM
LQGTLVRWLALFLSLKAAYRLYQRRMWGLEEEEEGGGRIGGGGEEEGSGRPRSQCLSRRG
LILWLDRPTAFPNTHTSTVLQNLVFTRHSPGLMGHCDVLVHSRCSANSTTLRPGQPTQPP
KFLLTAVPRVTAVPMERYCDDRSAEYEWQETRAGGGMAAKHCFLYGSLDLASDWMSRANT
FYPRCPGGVMALYPRHGWSYIRIPDKETLITDSGKLHTLDLLLCRLKTQGHRVLIYSQMT
RMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQSRTDIFVFLLSTRAGGLGINLTA
ADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICQLTIEERILQRAKEKSEIQRM
VISGGNFKPDTLKPKEVVSLLLDDEELEKRLRVRQEEKTQQEECSKVKDRRRKREKYADK
RKKDDEDPKDPKRRKDVNLVIPYNLSADNSNLSADGDDSFISVDMDDSAMPSPFSEVCAS
LLSLPGQISLSSELQPSSLPPDQDPDQDPDPDQDESSSDMLVIVDDPVSSAPQSRATNSP
VSVSGSMSDNMNGVSNQDTSSPGRGRSGRSRGRPKGSGSSSGGGAKSAGKGRVRKSTAGS
AAAMAGAMAGAAAASAAYGYSVTKAGLPTASPLQPSLGRSGTAPAFSPSRSSSPKGKGGT
VAPSQSNPQQKQPGHSHHHSHVTGRKGKGPGAPGAR
NT seq
4791 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctggggctgagcaggcagaggccgacgatggggcagcatggtcgtcatcaggc
ctggccaagcctcttcaccttcagcacctggagagatccctacgccttgacagcttcctc
cgccagaccgcctcagtcttcaacagagacctatccagtgatgacagcgacgatgacgga
ttaggggaggggccttctctgaggccggtcaatcagcacgcagccttggcgataaaagag
gagtcatgtgacctggatgaggaggggcttgttaccgagggcaccatcctcaacggaact
ccatcacaagaacacaaggaagacaaagccagtctatacaacttctccaaattgaagaag
agcaggaaatggctcaagagtatcctgttgagcgacgacaccagtgagtcagacacagag
gactctgactttagtctgtccagagaagagctacaggacatgctcagactgcaccagttc
accagggagcaccagaacaagttccacaacgacagagagcttcagcagtatcagtactat
agtacgggactgctctcctcccatgaccctttccacgaacaacagcgccacctgctgggc
cccaagaagaagaagatcaaggaggagaagaaattcaagggcaagttgaagaagggcaag
aggaaaaagaagagaggggaaggggagttctcaggcgaggggcggccgcatgtcaccaag
atcttcgccaagttttcccatgacgcccctcttcccatgttgaagaagaaacacctgacc
gtagagcagctgaacgcacgacgacgcaaagtctggctcaccatcgccaagaaggagtgc
cccaaggcattcaagcaaaaagcatcagccaagaacttcgtccttaccaatgccaaaaag
ctggcccaccagtgtatgcgtgaggtacgtagggcagccatccaagcccagaagaactgt
aaagaaacccttccccgggccaggagactgaccaaggagatgacgctctactggaagaaa
tatgagaaggtggagaaggaacacaggaagagagcagagaaagaggctctggagcaacgc
aaactggacgaggagctgagagaggcgaagcgtcagcagcgtaagctgaacttcttgatc
acccagacagagctgtacgcccacttcatggggggcaagggtcccggagaggaggacggg
ggagaggaggacattctcaacaagctggacgacaccaactctcacaggcagatgaccatc
ggggaacggctgacggtcaacgttggacaggaggactatgatagtgaatactacaagtct
caggccttaaggaaagctaaagaagcctacgagatacaccaggccagaacacgtctcttt
gacgaggaggctaaggacagtcgctgtgcctccctgcaccaggccagtggggggtcgggg
tcagggttcggggagagctacagcctgtctaacccttctatccaggccggagaggacatc
ccccagccaaccatcttcaacgggaaattgaagggataccagctgaaaggcatgaactgg
ctggctaacctctatgaacagggtatcaatggtatcctagcggatgagatgggcctgggg
aagactgttcagagcatcgctctgctgggtcacctggctgagcgtgacaacatctggggt
ccgttcctcatcatctctcctgcctccacactgaataactggcaccaggagtttacacgc
tttgtccccaaattcaaggttctgccgtactgggggaaccctcacgaccgcaaagtgatc
aggaagttctggagccagaaaaccctgtacacccagaatgctccgttccacgtggtgatc
accagttaccagctggtggttcaggatgtcaagtacttccagagggtcaagtggcagtac
atggttttagatgaagcccaggccctaaagagcagcaccagtgttcgttggaagatcttg
ctgcagtttcagtgtagaaacagactgttgctcactggaacgcccatacagaacactatg
gcagagttgtgggccctgctccatttcatcatgcctacgttgtttgactctcacgaggag
tttaatgaatggttctctaaagacatcgagagccatgcagagaacaagtctgccatcgac
gagaatcagctgtccaggctccatatgatcctgaaacccttcatgttgaggaggatcaag
aaggacgtggagaacgagctctctgacaagattgagatcctaacatactgccagttgacg
tgtagacagaggctgctctacagagctctgaggaacaagatctccatcgaggatcttctc
cagtcgtctatgggctcatctcagcaggctcacagtactacctcatcccttatgaaccta
gtcatgcagttcagaaaggtctgtaaccacccggacctgtttgagcgccaggagactcgt
tctcccttccacatgtcactgagaccctacgtcatgtccaagttcctctaccgccacgga
ctcacacacaccaccacgcacacacacagcaggaacaaggtgctccaggttctactgtct
cccttctctcctgatcatatccaccagtccctcttccacaggaaaggtgatcaggaagga
agttgtttctccttcctgcgtttcatcaacgtttcgccggcagagatgtttaacgtcatg
ctgcagggcactctggtcaggtggttagctctgtttctctccctgaaggcagcgtaccgg
ctctaccagagacgcatgtggggcctggaagaggaggaggagggtggagggaggatagga
ggaggaggagaggaggaagggagcgggaggcccaggagtcagtgtctctctcggaggggt
ctgatcctctggctggaccggcctactgctttccccaacacacacacaagcacagtgtta
cagaacctggtattcacccgtcacagcccaggtctgatgggtcactgtgatgttctggtc
cacagtcgatgctctgccaactccaccaccctacgaccgggccaacccacacaaccaccc
aagttcctgctcaccgctgtgccaagggttacggcggttcccatggagcggtactgtgac
gaccgcagcgctgagtacgagtggcaggagacgagggccggagggggcatggccgccaag
cactgcttcctgtacggctcccttgatctggcctctgattggatgtcccgagccaacact
ttctacccacgatgccctgggggagtgatggcgctctacccccggcatggctggtcctac
atcagaataccagacaaggagaccctgatcacggacagtgggaagctgcatactctggat
ctgctgctgtgtcgcctgaagactcagggacaccgcgtcctcatctactcccagatgact
cgcatgatcgacctgctggaggagtacatggtgtatcgtaaacacacctacatgcgtctg
gacggctcctccaagatctcagaacgcagagacatggtggctgacttccagagcaggact
gacatctttgtgttcctcctgagtacgagggctggaggtctgggcatcaacctgactgct
gctgacactgtgatcttctatgacagtgactggaaccctacagtggaccagcaggctatg
gacagagctcatcgcctgggtcagaccaagcaggtcactgtgtaccgtctgatctgtcag
ctcactatagaggagaggatactgcagagggccaaggagaagagtgagatccagaggatg
gtgatctctggggggaactttaaaccagacaccctgaagcctaaagaggtggtcagtcta
ctgctggacgatgaggagctggagaagagactgcgcgttcgtcaggaagagaagacacaa
caggaggagtgcagcaaggtgaaggaccgcaggagaaagagagagaaatacgctgacaag
agaaagaaggatgacgaggaccctaaggatcctaagaggaggaaagacgtgaacctggtc
atcccttacaacctgtctgcagacaactctaacctctcagccgacggagatgattcattc
atcagtgtagacatggacgactctgccatgcctagtcccttcagtgaggtgtgtgcatct
ctcctgtctctccctggtcagatctctctgagtagtgagctccagcccagctccctacct
ccagaccaggacccagaccaggacccagatccagaccaggatgagagcagtagtgacatg
ctagtcatcgtagacgaccctgtgtcttcagcaccacagtccagggccaccaactcgcct
gtcagcgtgtccggatctatgtcggacaacatgaacggtgtgtctaatcaggacacgtct
agtccggggcggggaaggtctggtaggagccggggacgacccaaaggctctgggtccagt
tctggaggcggagccaagtctgcagggaaggggcgtgtcaggaagtcgacagcgggcagc
gcagccgccatggcaggagcgatggccggagctgcagcagcctcagcagcctacggatac
agtgtgactaaagcgggtctccctacagcctccccgcttcagccgtctctgggtcggtca
gggacggccccagccttctcccccagcagaagttcctctcccaaggggaaaggtggcact
gtggcccccagccagagtaacccccagcagaaacaaccaggacatagccaccaccacagt
catgtgacaggaaggaagggcaagggacctggcgcacctggcgctcgatag
DBGET
integrated database retrieval system
