Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407441
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Entry
139407441 CDS
T10872
Name
(RefSeq) ATP-dependent RNA helicase DDX1-like isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139407441
03016 Transfer RNA biogenesis [BR:
ocla03016
]
139407441
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139407441
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
139407441
Transfer RNA biogenesis [BR:
ocla03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
139407441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
DUF5766
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
139407441
NCBI-ProteinID:
XP_071007334
LinkDB
All DBs
Position
4:complement(92140974..92176385)
Genome browser
AA seq
741 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRTAVKTGGAVFNKWQMNPYDRSTAFAIGPDGLCCQSREFKEWH
GCRSTKAITKGKYYYEVSCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTMGCYLDLDNGLLSFSKNGTDLGLAFEIPALLKNQPFFASCVLKNAELKF
NFGGEEFKNPPKTGFVAVDQASEGHVVKSSQTGSVKVSEVKAASCGPKALIVEPSKELAE
QTLNNVNQCKRYVDNPKLRDLLIIGGVPARDQLAVLEQGVDIVVGTPGRLDDLISTGKLT
LSQVRFLVLDECDGLLTAGYTDFIMRIYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKHDRSWERLDRKNHILTDEVHAKDNTRPGA
NSSEMWSEAIKILKGEYTIRAIKEHNMDQAIIFCRTKIDCDNMEQYFIVQGGGPDKKGHQ
LSCVCLHGDRKPNERKTNLDRFKKQEVKFLICTDVAARGIDIHGVPYVINVTLPDEKQNY
VHRIGRVGRAERMGLAISLVAMEKEKVWYHTCANRGRGCHNTRLKEEGGCTIWYNEKELL
SDVEEHLKCTITQCEPDIKVPVDDFDGKVTYGKRRAAAGGNYSGHVAALAPTVQELANLE
REAQTSFLHLGYLPNQLFKAF
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgaaatgggcgttatgcctgagatcgcccaagcagtcgaggagatg
gactggctcctccccacagacatccaggcagagtccattccgttgatcctggggggagga
gatgtcctcatggcggcagagactgggagcgggaagaccggggccttcagtatcccagtg
atccagatagtgtatgagactctgaaggaccagcaggaggggaagaaggggagaactgct
gtgaagactggtggagcagtcttcaataaatggcagatgaacccgtatgacagaagcaca
gcgtttgccattggaccagacggactgtgttgtcagagcagggagtttaaagaatggcat
ggctgtcgctctaccaaagccatcaccaaggggaagtactactatgaggtatcatgtcat
gaccagggcctgtgtaggatcggctggtctaccagccaggcagctttggacttaggtacc
gataagtacggctttggcttcggaggaacggggaagaaatctcacaacaaacagtttgac
agttatggagaggagttcaccatgcatgacaccatgggatgctatctggatctagacaat
ggactcctctccttctccaaaaacggtactgacctgggcttggcgtttgagatcccagct
cttctgaagaaccagcccttctttgcttcctgtgtcctcaagaatgcagagctgaagttt
aactttgggggggaggagtttaagaatcctcccaagactggcttcgtagcggtggaccaa
gcttctgagggacatgtggtcaaatccagccagacaggcagtgttaaggtgtcggaggtg
aaggctgcttcctgtggtcccaaagctctgatcgtcgaaccgtctaaagagcttgctgaa
cagaccctcaacaacgttaaccagtgtaagagatatgtggacaatcccaagctcagagat
cttctgatcatcggaggtgttcctgctagagaccagctggctgtactggaacaaggggtg
gacatcgtggttggaacaccaggtcgtctcgatgacctcatctctacggggaaactcacc
ttgtctcaagtccgcttcctggtcctagatgagtgtgatggtctcctaactgccggctac
accgactttatcatgagaatctacaaccagattcctcaagtcacctcggacggcaagaga
cttcaggtcatcgtctgctcagcgacgctccactccttcgatgtgaagaagctgtcggag
aggatcatgcacttccccacctgggtggacctgaagggagaggattctgtccctgagacc
gtacatcacgtggtcgtacctgttaaccctaaacacgaccgcagctgggaacgcctcgac
cgcaagaaccacatcctgactgatgaggtccatgctaaagacaacaccagaccaggagcc
aacagctcagagatgtggtctgaggccatcaagatcttgaagggggagtacaccatcaga
gccatcaaggaacacaacatggaccaggccatcatcttctgtcggaccaagatcgactgt
gacaacatggagcagtacttcatcgtacagggaggaggtccagataaaaaaggccaccag
ctttcctgtgtctgtctccatggtgaccggaagcccaacgaacgcaagaccaatctggac
cgattcaagaaacaggaagtgaagtttttgatctgtacagacgtggcggccaggggcatc
gacatccacggagtcccctacgtgatcaacgtgactctgccagatgagaagcagaactat
gtccatcgtatcggcagagtggggagagcagagaggatggggttggccatctctctcgtt
gccatggagaaggagaaggtgtggtaccatacgtgtgctaaccggggcagagggtgtcac
aacaccaggctgaaggaggagggaggatgtaccatctggtacaatgagaaggagctcctg
tctgatgtagaggagcatttaaagtgtaccatcacccagtgtgaaccggacatcaaggtt
cctgtggacgactttgacggcaaggtgacctacggcaagcgcagagcagcagcaggtggt
aactatagtggtcatgtggctgcgttggctcctacagttcaggagctggccaatctggag
agagaagctcagacctccttcctacatctggggtacctgcccaaccagctgttcaaagcc
ttctga
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