Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407550
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Entry
139407550 CDS
T10872
Name
(RefSeq) aggrecan core protein-like
KO
K06792
aggrecan 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Proteoglycans [BR:
ocla00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
139407550
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
139407550
Lectins [BR:
ocla04091
]
C-Type lectins
Lecticans
139407550
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139407550
NCBI-ProteinID:
XP_071007473
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Position
4:9232020..9247079
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AA seq
1288 aa
AA seq
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MITLLLLCVCLPFITSTISFEDPGDLDSNLSVSIPVEVPLRPLMGTKVVVPCYFQDNMVN
DPGAPTVTPLSHRIKWTYVTKGKATLILLASEGKVHVETEYLDRVTMVNYPLVPTDVTME
ITELRAKDSGTYRCEVMHGIENNYDWVDIQVQGIVFHYRAISTRYTLNFERAKAACIQNS
ATIATPAQLQAAFDDGFHQCDAGWLSDQTVRYPIHEPREGCFGDKDEFPGVRTYGLREVN
ETYDVYCFAQKMSGRVFYSMSVEKFTFYQAMDQCAKLGAKLATTGQLYLAWKSGMDVCNA
GWLADGSVRYPINIVRPQCGGGLLGVRTVYLFPNQTGYPYPDSHYDAICYQEDDGVGKTT
PFPEVATITASPMVYPGLTTAPETEARGEVLTQAPLDTITMAPTLPVPPTVTDTVTKVTP
VAGEAIISRVTANPDVGFEFPHDNDTAMAPTGVVFHYRADSSRYAMSFVEAQMACQSVGA
VIASSQQLQAAYEAGLHHCDAGWLRDQTVRYPILSPRDKCSGNLENVPGVRSYGLRPATE
QYDVYCYVDRLKGELFYSSDYDSFSYEEAVAHCQKLNTTLATTGQLYAAWRQGYDKCRPG
WLQDRSVRYPIHVPRPHCGGGKAGVHTIYAFPNQTENPDQHSRYDAYCFRAERVIIHTET
RLNVTLVVQEEMINMTTRTDQLMPVSPIKPPVSVDVSGSASADHSASGSGSGTPGHSGYT
SGRASGEGSGSGFQVTFEGSGPVLSGSGSGDPQEAGEGSTTVTYLPKVGSGDSGSGSGDS
GSGVAVGEFSGGIPSSVLPHSGSGSGVSGDLSGSGDSVIIIVDGEMVDISKRQPTGQEFG
KGGVDISGSGGMSGSYSLFSRDVTSTSGSGSPDISFTHSGLIDLTGQPSGEQEVSGYQTF
SSGFPSGFPSGFHSGSGFPSSRDESHSGHEVIFLTDDVMMEVTARQGEQHPEQGRGYVDV
SGDSSSQHEGSTSASGLSLGESPFAEGLSVVLLPGSTMSYPENIGSLGNIDRGDELDVLE
EGQEQKGLGGSTETIYVTAPLAVFPSMTTASAVSMVTPAVVEEPAVVYVVQGCAEGWVEF
MGSCYLHFAERDTWPDAEQRCQELNGHLVSITSQQEQEFVNSNAQDYQWIGLNDKDVQNE
FRWTDGSPLEFENWRPNQPDNYFNSWEDCVVMIWHENGQWNYVPCNYHLPFTCKSGPVMC
HSPPEVANARPMGSRRDRYPVNSIVRYQCDAGFTQRHPPVVRCRPDGRWEEPQVECIEPG
ATPSNKLHKRSIRRRSKAANSRSWRKLL
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atgatcaccttgctcctactgtgtgtgtgtcttcccttcatcacctcaactatatcattt
gaagaccccggcgatctcgacagtaatctgagtgtcagcattcccgtggaggtgccgctg
cgccctctgatgggcaccaaggtggttgtgccctgctacttccaggacaacatggtcaac
gaccccggcgcacccactgtcacccccctgtcccaccgcatcaagtggacctacgtcacc
aagggcaaggccaccctcatactgctggcgtcagagggcaaagttcacgtggagacggag
tacctagaccgggtcaccatggtcaactacccgctggtgcccaccgacgtcaccatggag
atcacagaactgcgtgccaaggactcgggcacttatcgctgtgaggtcatgcacggcatc
gagaataactatgactgggtggacatccaggttcaaggtattgtgttccactaccgagcc
atctcgacgcgctacactctgaactttgagagggccaaggctgcctgtatccagaacagt
gccaccatcgccaccccagcacaactacaggctgcctttgacgatggcttccaccaatgt
gacgctgggtggctctctgaccaaacagtcaggtaccccatccatgagcctcgtgagggt
tgctttggagacaaggatgagttcccgggagtgcgaacctacggcttgagagaggtcaac
gagacctatgacgtgtactgctttgcacagaagatgtcaggcagagtgttctactccatg
tctgtggagaagttcactttctaccaggcaatggaccagtgtgccaaactaggggccaag
cttgccaccacggggcagctgtacctggcctggaagtctggcatggacgtgtgtaacgcg
ggctggctggcagacgggagtgtgcgctaccccatcaatattgtcaggccccagtgtggt
ggaggactactaggagtgaggaccgtgtacctgttccctaaccagacaggctacccctac
ccggactcccactatgatgctatctgctaccaagaggacgacggtgtaggcaagaccacc
ccgttcccagaggtggccaccatcacagccagtcctatggtctatccagggctaaccacc
gcccctgaaactgaggcaaggggggaggtgctgacccaagcccccctggacaccatcacc
atggcaccgaccttacccgtcccacccactgtgactgacacggttacgaaggttaccccg
gtcgcgggggaagcgattattagcagggtgacagctaatcctgatgtgggcttcgagttc
cctcatgacaatgacactgccatggctcctacaggtgtggtgtttcactaccgtgctgac
tccagtcgctatgccatgtccttcgtggaagcccagatggcctgtcagagtgtgggtgcg
gtcatcgccagctcccagcagctacaggcagcctacgaggcagggctccaccactgtgat
gcaggctggctcagggaccagactgtcaggtaccccatcctgtctcccagagataagtgt
tcaggcaacctggagaatgtcccaggggtgaggtcctatggcttgagacctgctactgag
caatatgacgtctactgctatgtggaccgcctcaagggggagctgttctattccagtgac
tatgacagcttctcctatgaggaggccgtagcccactgccagaagctcaacaccacgcta
gccaccacagggcagctctatgccgcctggagacagggctacgacaagtgccgtccaggc
tggctgcaggatcgcagcgtccgctaccccatccatgtcccaaggccccactgtggaggc
ggcaaggccggggtacacaccatctacgccttccccaaccagacagaaaacccagaccag
cactccagatacgatgcatactgcttcagagcggaacgggtgattattcacactgaaacc
agactcaacgttactctagttgtccaggaggaaatgatcaacatgacaaccagaacagac
caactgatgcctgtgagccccatcaagccacctgtctctgtggatgtgtctggttcagcc
tcagctgatcattctgccagtggtagtggcagtggaacgcctggccatagtggatacaca
tctggtagggcaagcggcgagggctcagggtctggcttccaagtcaccttcgagggcagt
ggacctgtcttgtccggctctggctctggagatcctcaggaggcgggagaggggagtacc
actgtcacctacctcccgaaagtcgggtctggggatagtgggtccgggtctggggatagt
ggatctggggtggcggtgggagagttcagcggtgggataccgtccagtgtccttccccac
tcgggtagtggcagcggagtatctggggacctgagtggtagcggggactctgtcatcatc
attgtggacggagagatggtggacatctccaaacggcagcctactggacaggagtttgga
aaaggaggtgtggacatcagtggctccggaggaatgtctggatcgtatagcctcttcagc
agggatgttaccagcacctctggttccggaagtcctgacatatctttcacgcattcaggt
ctcatcgacctgaccggtcagccctcgggagagcaggaagtctccggctaccagaccttc
tcttctgggtttccaagcggtttcccctccggttttcacagtggctctggattcccatcc
agcagggacgaatcccattcaggccacgaggtcatcttcctgacagatgacgtgatgatg
gaggtgacggcacgtcaaggggagcagcatccggagcagggacggggttacgtagatgtc
agtggagacagcagtagccaacatgaagggagcacctcggccagtgggctctccctgggg
gagtcaccatttgcagagggcctgtctgtggtgctgctgcctggttcaaccatgagttac
ccagagaatatcggcagtcttggcaacatagacagaggggatgagctggatgttttggag
gaaggccaagagcagaaagggctgggaggttccacggagacaatctatgtcacggcacca
ttggcagtcttccctagcatgacgacagcatccgccgtctcgatggtaacccctgctgtg
gtggaggagcctgctgtagtgtacgtggtgcagggctgcgccgagggctgggtggaattc
atggggagctgctacctgcactttgcagagagagacacctggcctgacgctgagcagcgc
tgccaagagctgaacggccacctggtcagcatcacctcccaacaggagcaggagtttgtc
aactctaacgctcaggactatcagtggattggactcaatgacaaggatgtgcagaatgag
ttccgctggacagatggcagtccattggaatttgagaactggaggcccaaccagccggat
aactactttaactcttgggaggactgtgtggtgatgatctggcacgagaacggccagtgg
aactacgtgccctgcaactaccacctgcccttcacctgcaagagtggacctgtcatgtgc
cactcgcccccagaggtggccaacgccaggccgatgggcagcagaagagaccgttaccct
gtcaactctatagtccgctaccagtgtgacgcaggcttcacacagcgccacccgcctgtt
gtacgctgccgtcccgacgggcggtgggaggagccccaggtggagtgtatagaacccggt
gccacacccagcaacaagctacacaagaggtccatcaggagacggtctaaagcagccaac
agtcggtcatggaggaagcttctctaa
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