Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407583
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Entry
139407583 CDS
T10872
Name
(RefSeq) transcription intermediary factor 1-alpha-like isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139407583
Protein kinases [BR:
ocla01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
139407583
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
139407583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139407583
NCBI-ProteinID:
XP_071007510
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Position
4:15180173..15192590
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AA seq
997 aa
AA seq
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MDEGAESDDAVIIVENEAESMPVQENTNACNERTGTLNFLDTCPVCHLNFHSREPKLLPC
LHSFCKKCLPSASRNLAMPDTNSSTKPLNVIRCPVCRQECMEVDVMENFFVRDSVEASSS
TVERTVQLCMSCEDNTETTGFCVDCVEFMCATCVEAHQRVKFTKDHTIRQKGDVSQEYVG
VSTHRPVFCEVHKQEPLKLFCETCDLPTCRDCQLLKHKDHNYQFLEDAYKNHKHYMEDMN
RQLLEKKKIIEDVSNSINNGLLQVDENRISVHNEIKKSICSLILEINRKGKILVNQLEGL
TKDHESGLKKQKEDIGYLSRHLDHVINFTKWATARNGGTALLYCKRLILFQIGNLLRAKC
NTSFVPQSTVRFQCRSGFWASNVDLGSLVVENVPGPQLGSFQGIPHQLPHPGQGPSGSPN
SLPPGLSQARLAPHNHNTLAQLQMQVEKLAQQPHWQPQTPPWAWYQSMRLQRPPPGPLQG
GSPSQSLPPMPQQGRRFIAPPAIHLSPTSTLPSPGYPPQAVQSLRGLVSSPSSYALKHMD
VFNPMPHFSHNAPLSSNGSLSSPHLRQQQMESAYHNKHPGGPVQIIRPNFPQTLPASLPY
RTAQGHHHAGLTAISCEEKPGTVSWKPLETQQKAYGAGGSAAKRRRRASPGPIIIIKDEP
EDDISCVQGNLRANLPDSSTGVQAQTCRQDGGEQQVQISCQSTEEKAQAPPQPPGPSGDL
SQAPQQSHSLGAEQQLGSQGPAPEEDPNEDWCAVCQNGGELLLCCDKCPKVFHLSCHIPT
LFRLPSGEWFCSFCRDLSVPEVVYDCDISRLEPRTVKEEPDSEGGFCHVDKRKCERLLLK
MYCSELSADFQEARSPLILPENQETQKTPMVLSIVKSKLESRESPCYQTPSEFVSDIRLI
FTNCAAFNEADTEVATAGRNLERFFEEQLKLLYPERIFPKVKSEVISSVTPPVSPPPPTT
PDEESSQHAKHQRRCSETQELCTPAQLSSPKGEEEAV
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaggtgcagagtccgatgatgctgtcattattgtggagaacgaagcagagagc
atgccagttcaggagaacacgaacgcctgcaacgagcggacaggcaccttgaattttctg
gacacttgtcccgtgtgtcatttaaactttcacagtcgagaaccaaaacttctgccatgt
ctccactctttttgtaagaagtgtttgccgtcggcttccaggaatttggccatgccagac
actaacagctcgacgaaaccactgaatgtgattcgctgtccggtgtgcagacaggagtgt
atggaggtggacgtgatggagaacttctttgtgagggactcagtggaggcttccagcagc
accgtggagaggactgttcagctatgtatgagttgtgaggacaacacagagactacaggt
ttctgtgtggactgtgtggagttcatgtgtgccacctgcgtggaggcccaccagagggtc
aagttcaccaaagaccacaccatcagacagaagggggatgtatctcaagagtatgtgggt
gtttccactcataggccagtgttctgtgaagtccacaagcaggagcccctgaagctgttc
tgtgaaacctgtgatctaccaacctgtcgagactgtcagctactcaagcacaaggaccac
aattaccagtttctggaggatgcctataagaatcacaaacattatatggaggatatgaat
cgtcaactgctggaaaaaaagaagataattgaagatgtgtcaaactccataaacaatgga
ctccttcaagttgatgagaaccgcatatcagttcacaatgaaatcaagaagtccatctgt
agtctgatactagagatcaacagaaagggaaagattcttgtcaatcagcttgagggcctg
acaaaggatcatgagagcggtctgaagaagcagaaggaggatattggctatctgtccaga
cacctggatcacgtgatcaacttcacaaaatgggcgacagctaggaacggcggcacagct
ctcctgtactgcaaacgtttgattctgtttcagatcggaaacctgctgcgggctaaatgc
aatacctcgtttgtaccgcagagcactgtgcgtttccagtgtcggtcaggcttctgggct
tcaaatgtcgatctgggctcattagtggtggagaatgtcccaggcccccagctgggcagc
ttccagggcatccctcatcaactcccccatcctgggcagggcccctcaggctcccccaac
agcctgcccccaggcctctcccaggcccgcctggccccccacaaccacaacaccctggct
cagctccagatgcaggtggagaaactagcccaacagcctcactggcagccccagacccca
ccctgggcctggtaccagagcatgcggctccagagaccccctccagggcccctccagggt
ggctctccctcccagagtctcccccccatgccacagcagggccggaggttcattgccccc
cctgcaatccatctcagtcccaccagcaccctgccaagtcctggatatcctccccaggct
gtccaatcactgagaggcctggtgagcagccccagcagctatgcactcaaacacatggac
gtattcaacccaatgcctcacttctcccacaatgcaccactgtctagcaacggcagcctc
agttctcctcacttgcgacagcaacagatggagtctgcatatcacaacaagcaccctgga
ggccctgtccagataataagacccaacttccctcagaccctaccagcttccctcccatac
agaactgcacaaggacaccatcatgcaggactaactgctatatcctgtgaagagaaacca
gggactgtttcctggaagcctctggagacacagcagaaggcgtatggagctgggggatca
gctgccaagaggagacgaagggcatcgcctggacccatcatcatcatcaaagacgagcca
gaggacgacatcagctgtgtacagggtaacctgagagccaacctcccagacagtagcacg
ggggtccaggcccaaacctgtcggcaagatggaggggaacaacaagtccagatttcttgt
cagagcacagaggaaaaggcccaggccccaccacagcctccagggccttcgggggacctg
agtcaagccccacagcagagccactctctaggggcagagcagcagctaggcagtcagggc
ccagctccagaagaggaccctaatgaggattggtgtgctgtgtgtcagaatggaggagag
ctgctgctgtgttgtgacaagtgtcccaaagtcttccacctctcttgccacatccccacc
ctcttcagattacccagtggggagtggttctgctcattctgccgtgacctgtcagtgcct
gaggtggtgtatgactgtgacatcagcagattagagcccagaacagtgaaggaggaacca
gactctgagggaggattctgccatgtggacaaacggaaatgtgagcgactgttgctgaag
atgtactgcagtgagctcagtgctgacttccaggaggctagatcccccttgatattgcca
gagaaccaggagacccaaaagacgccgatggttctgtccattgtgaagagcaagctggaa
tccagggagagcccctgctaccagacaccttctgagtttgtatcagacatccgactcatc
ttcacgaactgtgcagcattcaatgaggctgacactgaggttgccactgcagggagaaac
ctggagaggttctttgaggagcagttgaagttactctaccctgaacggatttttccaaag
gtcaagtctgaggtcatcagttctgtgacccctcccgtctctcctccccctcccacaacc
cctgatgaggagagctcccagcatgcaaagcatcagcgcaggtgctctgagacccaggag
ttgtgtactcctgctcagctaagctcaccaaagggagaggaagaggccgtataa
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