Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407612
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Entry
139407612 CDS
T10872
Name
(RefSeq) procollagen galactosyltransferase 2-like
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla00310
Lysine degradation
ocla00514
Other types of O-glycan biosynthesis
ocla01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
139407612
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
139407612
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
ocla01003
]
139407612
Enzymes [BR:
ocla01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
139407612
Glycosyltransferases [BR:
ocla01003
]
O-Glycan biosynthesis
O-linked Gal type
139407612
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_25
Glyco_tranf_2_4
Anp1
Motif
Other DBs
NCBI-GeneID:
139407612
NCBI-ProteinID:
XP_071007542
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Position
4:complement(20168239..20196219)
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AA seq
622 aa
AA seq
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MMLGMMPAVGAVGVGLFCALLVAIMPGGMSDIATLVQDPVRPESSLLKPKIMIAILARNA
AHSLPHYLGCIDRLDYPKERIAIWAATDHSVDNSTAMLREWLKQAQDQYHYVEWRPMEQP
KSYTDEWGPKHWPPSRFNHVMKLRQAALKAARERWADYILFADSDNLMTNPRILNLLMAE
NLTLVAPMLESRSLYSNFWCGITPQGYYKRTPDYQPIREWKRLGCFAVPMVHSTFLLDLR
RDASRELAFYPPHPDYSWAFDDIMVFSFSARQADVQMYVCNREHYGFLPVPLKASQNVDE
EKESFTHTIAEAMIDHNIAPSEYLYNPQMPQDKMGFDEIFLINLKRRLDRRQRMLSTMTS
LGLQATLTDAVDGKALNTSQLQALGIEMIPGYQDPYSGRVLTRGEIGCFLSHHSTWVQLV
ERGLSKVLVLEDDVRFEPRFKRRMMTIMEEVEKAQLDWDLIYVGRKRMQVRQPERSVEGV
NNLVEADYSYWTLGYALSAQGARKLLAAQAFSKMLPVDEFLPVMFNKHPNSDFMSHFEPR
DLKAFSVEPLLLYPTHYTGEPGYVSDTETSTIWDDEATATDWDRQHQHARKTEQQGRIHT
VAQNSVTGDSPPPAARSTRDEL
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgggaatgatgcctgcggttggagccgtgggagtcgggctgttctgcgcgcta
cttgtcgccatcatgcccggtggcatgtcagacatagcgactctggtgcaggacccggtc
cgacccgaatcgtccctgctgaagccaaaaatcatgatcgccattctggctcgcaacgcg
gcgcacagcctgccgcactacctgggctgcatcgacaggctagactacccgaaggagcgg
atcgctatatgggcagcgacagaccacagtgtggacaacagcacagccatgctgagggag
tggctgaagcaggcccaggaccagtaccactatgtggagtggagacccatggagcagccc
aagtcctatactgatgagtgggggcccaagcactggcctccgtcccgcttcaaccatgtg
atgaagctgaggcaggctgctctgaaggcagcacgggaacgctgggcagattatatactg
tttgcagacagtgataacctgatgaccaaccccaggatcctgaacctactcatggctgag
aatctgactctggtggctcccatgctggagtctcgctctctctactccaacttctggtgt
ggcatcactccccagggttactataagcgtactccagactaccagccaatcagggagtgg
aagcgtctgggttgcttcgccgtacccatggtgcactctaccttcctgttagacctgagg
cgtgacgccagtcgggagctggccttctacccccctcaccctgactacagctgggccttc
gatgacatcatggtattctccttctccgcccgacaggcagatgtccagatgtatgtgtgt
aacagagaacactatggcttcctgccggttcctctgaaggcctcacagaatgttgacgag
gagaaggagagcttcacacacactatcgctgaggccatgattgaccacaacatagcgccc
tcagagtacttgtacaatccccagatgccgcaggacaagatgggctttgatgagatcttc
ctgatcaatctgaaacgtcgtctggacaggagacagagaatgttgagcaccatgacctct
ctgggtctgcaggccacccttactgacgcagtggatggcaaggctctgaacacttctcaa
ctgcaggcgttgggtatagagatgattccaggttatcaggacccatactctggccgtgtt
ctaaccagaggagagataggctgcttcctcagccaccactccacctgggtacagttggtg
gagcgtggtctttccaaggtgctggtgttggaggatgatgtgaggtttgagcccagattt
aagaggcgaatgatgaccatcatggaggaagtagagaaggcccagctggactgggatctc
atctatgtggggcgtaagcgtatgcaagtgcgtcagccggagcgttcagtggaaggggtt
aataacctggtggaggcggactactcgtattggacgctgggctatgctctgtcagcgcag
ggtgccaggaagctgctggctgctcaggccttcagcaagatgctacctgttgatgagttc
ctccccgtcatgttcaacaaacaccccaattctgacttcatgtctcactttgagcctcgg
gatctgaaggccttctccgtggaacccctcctcctctaccccacccactacacgggcgag
ccaggctacgtcagcgacacagagacctccaccatctgggacgacgaggccaccgcaacc
gactgggaccgccagcaccagcatgccaggaagacagaacagcaaggccgcatccacacc
gtggcccagaacagtgtgacgggagactcacctccacccgctgcccgctccacacgagac
gaactctga
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