Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407656
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Entry
139407656 CDS
T10872
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139407656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139407656
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
139407656
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
139407656
NCBI-ProteinID:
XP_071007597
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Position
4:29176792..29220927
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AA seq
514 aa
AA seq
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MSAEMDKATDASGGDEEEWLYGDESEEKAEEEAPNSAKAQPTAEEVHENGVVKQDTGQED
GESDSDSEDDDDVCVTIGDIKTGGSSQPFNAFGSTPVNLNIKAAGRTHASVGPKAKGVDL
DALGSVNGIPVLEVDIESFEEKPWRKPGSDLSDYFNYGFNEDTWKTYCEKQRRLRMGYEG
MNHASATKIMVHQGRSAHGDRDGALSCFRSDYSSPSNHYNSGSSSRKPSGTIDVIGGQTG
TISRVEGRRRHNIEGNNIQVLSEPPSDAEPTPTKMPPFFPPNIPPPPFPPPPHNVSSAPP
LIPPPRIPINVPPPGYPPGAPPPSLIPTLDSGRSGGYDGRSAPPYPPFPPGVYPPPPPGS
AAASWAGVFDSAKAWEYYAQRDNERERHKERDRTRERGHEKEREREREHNPSSQVVNSEE
DRHRHRDYGERGYDRHHHERSSREKEERHREKRHRDKEEGRHKSSSSSSRRRHESEEGDS
HRRHKHKKVKRSREDKEPSQELSADQENQSEPTE
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagaaatggacaaagcaactgatgcaagcgggggcgatgaagaagaatggtta
tatggagatgagagtgaggagaaggcagaggaagaggcacctaatagtgcaaaggcccag
ccgactgctgaagaggtccatgagaatggagtagtgaagcaggatacaggccaggaagat
ggagaaagtgacagtgacagcgaggatgatgatgacgtgtgtgtaaccattggcgatata
aagaccggaggctcgtctcagcctttcaatgcttttggatccacaccagttaatctcaac
attaaggctgcagggagaacacatgcgtcagttggccccaaagccaaaggagtggacctg
gatgcactgggcagtgttaacggaatccctgtgttggaggtcgacattgagtcttttgaa
gaaaagccgtggagaaagcctggttcggacctctctgactactttaactatggctttaac
gaggacacctggaagacctactgtgagaaacagaggagactacgcatggggtatgagggc
atgaaccatgcttcagccactaaaatcatggtccaccagggacgttcagcccatggtgat
agggatggggccctttcctgctttaggtctgactattcctcccccagcaaccactacaat
tcaggctcctccagtagaaagccgagcggcaccattgatgttattgggggacaaactggt
accatcagccgggtagagggacgaagacgtcacaatatagaaggaaataacatccaggtg
ctttctgagcccccctctgatgctgagcctactcccactaagatgccccccttttttcct
cccaacatccccccgcctcctttcccgcctccaccccacaatgtcagctccgcccctcca
ctcattcctccaccacggatccccatcaatgttcctccacctggctaccctcctggcgca
ccacctccttctctgattcccaccttagacagtggacgctctggaggctatgatggtcgc
tcagctccaccgtacccccccttccctccaggtgtgtaccctcctcctcccccgggtagc
gcagcagcctcctgggccggggtattcgacagtgccaaggcctgggagtactacgcgcag
cgggacaacgagcgagagcgccacaaggaaagagaccgaaccagagaacgtggacacgag
aaagaaagagaaagggagagggagcacaacccttcctcccaggtcgtcaacagtgaggag
gatcggcaccggcacagggactatggggagagaggatatgaccgccaccaccacgagaga
tccagcagagagaaagaagagagacaccgagagaagagacacagagacaaagaggagggg
agacacaagtcctcaagcagtagcagcaggaggagacatgagagtgaggagggggacagt
catcgaagacacaaacacaagaaggtcaagaggagcagagaggacaaggagcccagccag
gaactctctgctgaccaggagaaccaatcagagcccacagagtga
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