KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407913
Entry
139407913         CDS       T10872                                 
Name
(RefSeq) TATA box-binding protein-like 1 isoform X1
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    139407913
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ocla03000]
    139407913
   03021 Transcription machinery [BR:ocla03021]
    139407913
Transcription factors [BR:ocla03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    139407913
Transcription machinery [BR:ocla03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     139407913
  RNA polymerase III system
    TFIIIB
     139407913
  RNA polymerase I system
    SL1/TIF-1B
     139407913
SSDB
Motif
Pfam: TBP DUF3378
Other DBs
NCBI-GeneID: 139407913
NCBI-ProteinID: XP_071007892
LinkDB
Position
4:91536492..91555866
AA seq 187 aa
MEPSNDVALDIIITNVVAVFRTRCHLNLRTIALEGVNVIYKPEYGKVLMKLRKPRITASI
WSSGKIICTGATSEDEAKQGARRLARTLQKLGFKVRFSEFKVVNVLAVCSMPFAIRLIDF
TKNNRPIASYEPELHPAATYRIKTLKATVQVFSTGSLTITGPNVQAVATAVEHIYPMLLE
CQKPLRK
NT seq 564 nt   +upstreamnt  +downstreamnt
atggagcccagtaatgacgtagcgttggatatcattatcaccaatgtggtggctgtattc
aggacacgctgccacctcaacctgcgcaccatcgctctagagggggtcaacgtaatctat
aaacctgaatatgggaaagtcctgatgaaactccgcaaacccaggatcaccgcttccatc
tggtcttcagggaaaatcatctgtaccggcgctaccagcgaggatgaggctaagcaagga
gcccggaggttagcccgcaccctgcagaaactgggcttcaaggtgaggttctcagagttc
aaggtggtgaatgtcctggcagtgtgctccatgcccttcgccatccgactcatcgacttc
accaagaacaaccggcccatcgccagctatgagccagagctccaccccgctgccacctac
aggatcaaaaccctcaaggccaccgtccaggtcttctctaccggcagccttaccatcaca
ggaccaaatgtgcaggctgtagccacggctgtagagcacatctaccccatgctgttagag
tgtcagaaacccctccgcaaataa

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