Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407926
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Entry
139407926 CDS
T10872
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139407926
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139407926
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
ATG17_like
Motif
Other DBs
NCBI-GeneID:
139407926
NCBI-ProteinID:
XP_071007914
LinkDB
All DBs
Position
1:45821523..45857760
Genome browser
AA seq
1789 aa
AA seq
DB search
MFIFQIATMLSAGTCVLAQVGFPEFSDVCTEGSCYPATGDLLIGRAHQLSTNSTCGLHRP
EPFCIVSHLQDEKKCFLCDSTDVYVKSVVNTTTGHRVENVVTTFAPNRLKTWWQSENGLE
KVTIQLNLEAEFHFTHLIMTFKTFRPAAMVIERSADFGKNWQVYRYFAYDCAAAYPAISP
GPMQKVDDIICDSHYSDIEPSTEGEVIFRVLDPAFRIEDPYSPRIQNMLKITNLRVKFTK
LHTLGDNLLDSRMEIKEKYYYAVYDMVVRGNCFCYGHASECAPVAGAGAGDGVEGMVHGH
CMCNHNTMGLNCEKCQDFYHELPWRPAKGRNTNACKKCNCNQHSGSCHFDMAVYVSTGNV
SGGVCDECQHNTMGHNCEQCKPFYYQHPERDIRDPSICEPCNCDPVGSLNGGICDRMTDV
SSGLITGQCRCKPNVEGERCDQCQQAHYGLGDHPLGCLACTCNTLGTVPGGSPCHTDSGD
CFCKSLVTGRDCDQCMPQHWGLSNDMDGCRPCDCDLGGALNNDCSQETGQCACREHMFGR
RCDQVESGFYFIALDHYTYEAEDAKFGPGLTVVQRPRPQDRSPTWTGIGFVNVPEGAYLE
FSIDNIPHSMEYDVLIRYEPQLPDQWEEVLMTVMRPSLISADSRCANTMPDDDNQMISLH
PGSRYMVLPRPVCFEAGMNYTVRLSLPLYSALSDVQSPYTLIDSIVLMPHCKNLEIFTGS
VGGDVATNSAWDTFQRYRCLENSQSVVKTPSTDICRNFIFSVSALLHRGAKACQCDPQGA
LSTVCAASGGQCQCRPNVVGRNCDKCAPATFLFGPSGCRPCDCNPQGSEDAFCHEATGQC
VCIPGAYSRQCDRCLPGHWGFPNCRLCTCNGHTEQCDPYSGKCLGCREQTTGHNCERCLE
GYYGDPVLGSGDHCRLCMCPDGPGSGRQFAGECYRGLDAPYQVFCVCSPGYRGARCEECA
PGYYGNPHENGGQCQPCQCNNNIDMLDQESCNVRTGECLKCLYHTEGQGCHGCKLGYYGD
ALTQNCRKCVCNHLGTNPATCPVVGDCHCDLGSGQCQCLPNVLGQHCDQCAPDTWNMASE
TGCDACDCDPNHSFGTSCNELSGQCSCKPGFGGKTCRECRELFWGEPEEKCNACDCDPRG
IAEQQCHKANGRCVCVEGVSGPRCDVCTRGYSGTFPYCERCHQCFADWDLVVGQLTNQTH
RLVNKVNTIKASGITGPYKHTIDNMEQSAGAIRTILAQNPATQPLSEIQQLLEQATDLME
KMSNKLNLTEEALAQVSSDDNSTNTKLDSLKEDTQKLDRTVKDLLDQVELIKNTDIRGAT
DSVTKYYQQSLAADARANASTSGPGNPVESSAILRQATEDKMNDTREEFHRRQEEHAKRL
DDLAGQLETLDLSELNVKTCGSPADALCVDSPCGGLSCVDFEGNRRCGGEGCGGLVTLAN
NAWQKAKDFDQEILTAMEEVDKLAKMVSEAKVKADEAKLSAQNVLLKTNGTKQRVDQSNE
ELRSLIRQIRDFLTQDAADLESIEAVANEVLAMQMPTTPAQLQTLTDEIRERVGDLAHVE
TILNQSSDDIQRAESLLEQARRVSKEATNVRDTAEMVKQVLEEAERAQSAAAKAIKQATT
DIKGTNDLLTSVESETVDSEYKLNNATQRLLRLERDVTLLREKTLNTSLSSEQTEKDTES
INKVAEQVKKNLDSELKDKYSTVEDLITQKAGGVANAKKRAELLQQEAKDLLLQASDKLQ
LLKDLEKSYEDNQKTLEDKANQLVDLEKSIKELLQEISHKVTVYSTCLF
NT seq
5370 nt
NT seq
+upstream
nt +downstream
nt
atgtttatatttcaaattgcgaccatgctatccgcagggacgtgcgtccttgcccaggta
ggctttccagagttcagcgatgtatgcacggaggggagctgctacccggctaccggagac
cttctcattggcagagcacaccagctctccaccaactccacatgtggcctccaccggccc
gagccgttctgtatcgtcagtcatttacaggatgagaagaaatgctttttgtgtgactcc
accgacgtctacgtcaaaagcgtggtgaacaccaccaccggccaccgggtggagaacgtc
gtgaccacattcgcccccaaccgcttgaaaacctggtggcagtcagagaatggtcttgag
aaagtgaccatccagctgaacttggaggcggagtttcatttcacccacctcatcatgacc
ttcaagaccttccggcctgctgctatggtgatcgagcgctcggctgactttgggaagaac
tggcaggtgtaccgctactttgcatacgactgcgcggcggcataccctgccatatccccg
gggcccatgcagaaagtggatgacatcatctgcgattcgcattactccgacatagagccg
tcgacagagggagaggtcatcttccgagttttggatccagctttccgtattgaagatccc
tacagccccagaatccaaaacatgttgaagatcaccaacctgagggtgaagttcaccaag
ctgcacaccctgggagacaacctgctggactcccgcatggagatcaaggagaagtactac
tacgccgtctacgacatggtggtccggggtaactgcttctgctacggacacgcctccgag
tgcgcccccgtcgccggggctggggctggggatggagtggagggcatggtgcatggccac
tgtatgtgcaaccacaacaccatggggctaaactgtgagaagtgtcaggacttctaccac
gagctgccctggagaccagccaagggacgcaacaccaatgcctgtaaaaagtgtaactgt
aaccagcactcaggctcgtgtcacttcgacatggcagtttacgtctctacgggtaatgtg
agcggcggtgtgtgtgacgagtgccagcacaacaccatgggtcacaactgtgaacagtgc
aagcctttctactaccagcacccagagagggacatccgcgaccccagcatctgtgaacca
tgtaactgtgatccggtgggctccctgaatggcgggatctgtgacaggatgactgatgtg
tcgtctggactgatcactggccagtgtcgctgcaaacccaatgtggagggagagcgctgt
gaccagtgccagcaggcccactatggcctgggtgaccaccctctgggctgcctggcctgc
acctgtaataccctggggacagttcctggagggagtccgtgtcatacagactcaggagat
tgtttctgcaaaagcctggtcacagggagagactgtgaccaatgtatgcctcagcactgg
gggctcagcaatgatatggatggctgcagaccatgtgactgtgacctgggtggagccctc
aataacgactgttctcaggagactggccagtgtgcgtgtagagaacacatgtttggccgg
cgctgtgaccaggtggagtcaggcttctatttcattgccctggaccactacacctacgag
gccgaggacgccaagtttggacctggtttgacagtagtgcagagacctcgcccgcaggac
cgtagccccacctggacagggataggttttgtcaacgttcctgagggggcttacctggag
ttctccattgacaacatcccccactccatggagtacgacgtcctcatccgctacgagcct
cagttaccagaccagtgggaggaggttttgatgacagtgatgcggcccagtttgatttca
gcagacagtcgctgtgccaacaccatgcccgatgacgacaaccagatgatatcccttcat
cccggatcacgatacatggtgctccccagaccagtgtgtttcgaggcagggatgaactac
actgttcgtctgagcctgcccctctactctgcactcagtgacgtacagtccccatataca
cttatcgactcgattgtgctaatgccccactgtaagaacctggagatcttcactggttct
gtgggaggtgacgtggccaccaacagtgcctgggacacgttccagcgttaccgctgtctg
gagaacagccagagcgtagtgaagaccccgtccacagacatctgccgcaacttcatcttc
agcgtatctgctctgctgcaccggggagctaaagcatgccagtgtgacccgcagggcgcc
ctcagcacggtgtgtgccgccagcggtgggcagtgccagtgtcgccccaacgtggtaggc
aggaactgtgacaagtgtgcccctgccaccttcctgtttggacccagtggctgcagaccc
tgtgattgcaatccacagggatcggaggatgcgttctgccacgaggccacaggccagtgt
gtgtgtatccccggggcatacagccgtcagtgtgaccgctgtctgccgggtcactggggc
ttccccaactgtcgcctctgcacctgcaacggtcacacagagcagtgcgacccctactcc
ggaaaatgcctgggctgccgagaacagaccactggacacaactgcgagaggtgtctggag
ggttactacggcgaccccgtcctgggttcaggggaccattgtcggctctgtatgtgtccg
gatgggcccggaagcgggcgacagtttgccggtgaatgttaccgcggtctggacgcccct
taccaggtgttctgtgtctgcagccccgggtacagaggtgccagatgtgaggagtgtgcc
ccaggttactatggaaacccccatgagaacggcgggcagtgccaaccctgccagtgcaac
aacaacattgacatgctggatcaggagtcctgtaatgtcagaacgggtgaatgtctcaaa
tgtctctatcacaccgagggtcagggctgccacggctgcaagctgggttactatggagat
gccctcacgcaaaactgcagaaagtgtgtttgtaaccacctgggcaccaatccagccacg
tgcccggtggtgggtgactgccactgtgatctgggcagcgggcagtgccagtgtctaccg
aatgtgctgggtcagcactgtgaccagtgtgcccccgacacctggaacatggccagcgag
acgggctgtgacgcctgcgactgtgaccccaaccactcatttgggacttcctgcaatgag
ctgagtggccaatgctcctgtaagcctggctttgggggtaaaacgtgtcgggagtgcaga
gaactgttctggggagaacctgaagagaaatgcaacgcatgtgactgtgacccgcgaggc
atcgccgagcagcagtgccacaaggccaacggtcgctgcgtgtgcgtggagggcgtgtct
ggtccccgctgtgacgtctgcacccgtggctactctggcaccttcccctactgcgaacgc
tgccaccagtgcttcgccgactgggacctggtcgtgggtcagctgaccaatcagacccac
aggctggtcaacaaggtgaacaccatcaaggccagcggcatcaccggaccctataaacac
accatagataacatggagcagagcgccggggccataagaactatcctggcccagaacccg
gctacacagccactgtcagagatacagcagctactggagcaggccacagatctaatggaa
aagatgagcaacaagctgaacctcactgaggaggcactggcccaggtatcatctgatgac
aacagcaccaacaccaaactggactcactcaaagaggacacccagaagctggatcgcact
gtcaaggatctgctggaccaagtggagctcatcaagaacactgacattcggggagcgaca
gacagtgtcaccaagtactaccagcagtctctggctgcagatgctcgcgccaacgcctca
actagcggcccaggcaaccctgtggagagctctgccattttacggcaagccacagaggac
aagatgaacgacaccagggaggagttccacaggaggcaggaagaacacgccaagagactg
gatgacctggcaggacaactggagacactggacctatcagaactcaacgtgaagacgtgt
ggcagcccagctgatgcgttgtgtgtggactctccgtgcggggggttgagctgtgtggac
ttcgaggggaacaggaggtgcggtggcgaagggtgcggcggtctggtcaccctggccaat
aacgcctggcagaaggccaaggactttgaccaggagatcctcacggccatggaggaagtg
gacaagctcgccaaaatggtgtcggaggccaaggtgaaggcggatgaggctaagctgagt
gcccagaacgtgctgctgaagaccaacggtaccaagcagcgtgtggaccagagcaacgag
gagctgcgcagcctcatccgacagatcagagacttcctcacacaggatgcagcggacctg
gagagcattgaggcagtggccaacgaggtgctggccatgcagatgcccaccacaccagcc
cagctccaaaccctgacagacgagatcagggaaagagtaggagacctagcccacgtggag
accatccttaaccagagctccgacgacatccagagagccgagagcctactggagcaggca
cgcagagtcagtaaagaggcgacaaacgtgagggacacagcagagatggtgaagcaggtt
ctggaggaggctgagcgtgcccagagcgcagcggccaaggccatcaaacaggccaccact
gacatcaaaggcaccaatgacctcctgacctcagtggagtcggagacagtggactctgag
tacaagctgaacaacgccacccagaggctgctgcggttagagcgcgacgtcacgctgctc
agagagaagacgctgaacacctcactcagctctgaacaaactgaaaaagacacagagagc
atcaacaaagtggctgagcaggtcaaaaagaacctggactcggagctgaaggataagtac
agcaccgtggaggacctgatcacacagaaggccgggggcgtggccaacgccaagaagagg
gcggagcttctacagcaggaagccaaagacctgctgctacaggccagcgacaagctgcag
ctgctgaaagatttagagaagtcgtatgaggacaaccagaagactttggaagacaaggcc
aaccagttggtggatctggagaagtccatcaaagagcttctgcaggagatcagtcacaaa
gtcactgtctacagcacctgtctgttttaa
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integrated database retrieval system
