Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407948
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Entry
139407948 CDS
T10872
Name
(RefSeq) laminin subunit beta-4
KO
K06245
laminin, beta 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139407948
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139407948
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
LAMB1
EGF_LMN_ATRN
LAMB4
Laminin_I
Motif
Other DBs
NCBI-GeneID:
139407948
NCBI-ProteinID:
XP_071007924
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All DBs
Position
1:45800004..45819652
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AA seq
1789 aa
AA seq
DB search
MVSLFLLVLLVPGALLQEDCDVNSCHPQLGDLMVGRAAQLSASSTCGRNGPQNYCILGYL
EDEQKCFKCDSRQPYNLYNNQNSHQIENVITTFGPERKMKWWQSENGVHQVSIRLDLETL
FQFSHLVLTFKSFRPAAMLVERSKDYGNSWKVFRYFAEDCASHFPGVSQGPADSTDDVVC
DSRYSASEPSTDGEVVLKALDPSFDIENPYAPHIQEQITLTNLRVNFTHLFTLGDTLLGR
KKRNPQEKYYYALYEMVVRGSCFCNGHASMCMPVDGTRGDVLNEPGVIHGRCVCQHNTVG
TNCERCQDFYNDVPWRPAGQSDPHVCRRCNCHGHSETCHFDIDQYQASGGVSGGVCDGCR
HDRMGPQCERCRPYLYQDPQLSMEDPRGCISCDCDLTGSLDNGLCDPVSGRCVCKENVAG
DRCDRCKFGFYGFSQEDPTGCQRCRCNFLGSVLTPYPCDQVTGQCVCQRFAMGPLCDQCL
PGYWGLGNTVHTCSPCDCDHGGAYSSTCSSLDGQCQCLPNMVGRSCGDPAPGHFLAALDY
YLYEAENAAPLEGKSSSPLLKPTDLPVCEEYYRQQGYDIKYQNGRLVLTRRSKRQARRRR
QGQRSIPLDPGSALQIVPRERTPDVPITWTGPGFVRVLDGAGLRFTVDNLPASLDYHLVI
RYEPESPDDWMASVSIVPLLAGDGGCPTSPKGEKTLTIPGAARVAILDTPVCLNAGRRYY
VDITFRKQPNSNPQSSSHTLVDSMGLIPKMESVQDFCSQSELDSFRRFRCFELAAEQETL
PDVCYGLIGSLSARIHNGAMLCRCNIQGSHGPYCSKYGGLCECKANVVGRCCDSCAPLNF
GFGPNGCAPCECDPRGAVAELCDQVRGQCPCRMEVGGRRCDRCLSGYYGFPLCRPCKCNG
LAELCDQDTGACLDCREHSTGYNCESCVEGYFGDPVSREPCKPCLCPDTQSSGRFFASTC
NKDPESGSLTCDCLAGHTGLRCDACSAGFYGGLTAPGGGGCDECLCNNNIDPADSDACDS
VTGECLRCLHNTQGPRCQSCKPGYYGDALAQDCKECSCDRQGTDVTQCPLGSPCFCDPLT
GQCPCRAGAVGTLCDECATGFWNIQGESGCQPCKCDPANSFNNHCDKVTGHCQCRTEFGG
RQCDECGENHFGNPDLQCVSCDCNMEGTDRPACNPLTGECLCRVGVMGIFCDECAPGYDQ
VFPACLPCHPCAVLWADNVTDVHRAAQRMRTFIPPHREQLEPGHSRQLQRMLEMHSKLDY
LGNLTGRSLPRVKDVEKLCVIISKLKDSIDPNAIIVDSSSLLNTEIDNIHHEFKMLLDNL
RNKIGEAPKLDLKEMQEALEKIRKQHADFMADEKKVKEAERALENSMDTRQEIKDHLSSC
SILGDMEGLEKKVKALSVAKLNKNICGGPGDEECSKSECGGALCRDFLGQRECGGPTCKG
SFPVSHNATKTAEQVENDLIDLLQKLKDSKIKINEAKQVTQGTHEQAEELQKKITDSKEK
YKREKNDTKDLINRVKDYLTDEMVAPEDIENLVKVVLAIQLPGSPDDIRSMIQNIRGVLT
NFIEFKEDLKKLKDQAKTAQDLLEKAQAIRDRTRAIDVTDLKKTITDTENTQDKVEQDLE
KAKESNGVANKMIKEIEKKLNNIETNLNSTRTPEMLEEIEVLKSKTEMNREQAEQAKADA
DAAIGATTDAEKGLDKVTALFDRLKTGNTNQTNNEAANERLKNITVEAEKVAKDIQDKIQ
QIDDLEKKIQDFIRNKEDKAKEVAMLLEMVEALQKEITARVDGYINCTS
NT seq
5370 nt
NT seq
+upstream
nt +downstream
nt
atggtttctctgttcctgctcgtgttgctggtacccggggccctcctccaggaagactgt
gatgtcaactcttgccacccccagctgggggacctgatggtgggccgcgctgcccagctc
tccgcctcctccacctgtggacggaacgggccccagaactactgcatcctcggatacctg
gaggatgagcagaagtgtttcaaatgtgactccaggcagccctacaacctctacaacaac
caaaacagccaccagattgagaacgtcatcaccacctttggccctgagcgcaagatgaag
tggtggcagtctgagaacggggttcatcaagtcagtatccggctggatctggagactctg
ttccagttcagccatcttgtcctcactttcaagagtttccgtcctgccgccatgctggtg
gagaggtccaaagactacgggaacagttggaaggtgttccgttactttgccgaggactgt
gcctcccacttccctggggtctcacaggggccggctgacagcaccgatgacgtcgtctgt
gacagcagatactccgcctcagagccatctactgacggagaggtggtgttgaaggctcta
gatccaagctttgacatagagaacccatatgctccccatattcaagagcagatcaccttg
accaacctgcgggtcaacttcacccatctgttcaccctgggtgacaccctactggggcgg
aagaagaggaaccctcaggagaagtactactatgccctgtacgaaatggtggtgcgcggc
agctgcttctgtaatggccatgccagcatgtgtatgcccgtggatggcacccggggtgac
gtcttaaatgagcctggcgtgattcacgggcgctgtgtatgccaacacaacactgtgggc
acaaactgtgagagatgccaggacttttacaacgatgtaccctggaggccggccggccaa
tctgacccacatgtctgcagaaggtgtaactgtcacggtcattcggagacgtgtcacttc
gacatagaccagtaccaggccagtgggggggtcagcgggggggtgtgtgacggctgccga
catgaccgcatgggtccccagtgtgaacgctgccgaccctatctctatcaggacccccag
ctctccatggaagaccctcggggctgtatctcatgtgactgtgacctgacggggtccctg
gataacggcctgtgtgaccccgtgtcgggccgctgcgtgtgtaaggagaacgtggcgggg
gacaggtgtgatcgctgtaaatttggcttctacgggttcagccaggaggaccccactggc
tgccagaggtgcaggtgtaacttcctgggtagtgtcctgaccccctacccatgtgaccag
gtgacaggccagtgtgtatgtcaacgcttcgccatgggacccctgtgtgaccaatgtctg
ccaggttactggggtctggggaacactgtacacacctgctcaccttgtgactgtgaccat
ggaggagcctacagcagcacgtgctcttcattggacggccagtgtcagtgcctgccaaac
atggtgggccggagctgtggtgatcctgccccgggacatttcctggctgctctagactac
tacctgtacgaggcagagaacgctgccccactggagggaaaaagctcctcccctctgttg
aaacccacagacctgcctgtgtgtgaggaatactacagacagcagggctatgacatcaaa
tatcaaaatggccgcttggtcctgaccaggagaagcaaaagacaagccaggaggagaaga
cagggacagaggtccattcccctggacccaggctcagccctccagattgtgccccgggag
aggacaccagatgtaccaatcacttggaccggcccaggattcgtgcgggtcctggatggt
gctgggcttaggttcactgtggacaacctcccggcgtccctcgactaccatctagtcatc
cgctatgaaccagagtcgccagatgactggatggcctctgtgagcattgttccattattg
gctggtgacggaggttgtcccactagcccgaaaggggagaaaaccctcaccatacctggg
gctgccagggttgccattttggatacgcctgtgtgtctgaacgcgggaagaagatattat
gtggacatcacttttaggaagcagcccaactctaaccctcagtccagctcacataccctc
gtcgactcaatgggtctgatccctaagatggagtctgtgcaggacttctgttcgcagagt
gagctggactcgttcagaagattccgctgttttgagttggctgctgagcaggagaccctg
cctgatgtgtgttatggcctcattggaagcctgtcggctcgcatacacaacggtgccatg
ctttgcaggtgtaacatccagggttctcatggcccctactgcagtaaatacggagggctc
tgtgagtgcaaggccaacgtggttggccgctgctgtgactcctgcgcccccctgaacttc
ggcttcggacccaacggctgtgcaccctgtgagtgtgaccctcgcggtgcagtggcggag
ctgtgtgaccaggtcagaggtcagtgtccgtgtcgtatggaggtgggcgggcgacgctgt
gatcgttgcctgtctgggtactacggcttcccactgtgtcggccctgtaagtgcaacggc
ctggctgaactgtgtgaccaggacactggagcctgcctggactgcagggagcactccacc
ggatacaattgtgagagctgtgtggagggttactttggtgacccagtctccagggagccc
tgtaagccttgtctgtgtcctgacactcagtccagtggacggttctttgccagcacctgc
aacaaggacccagagtctggtagcctgacttgtgactgcctggctggacacacaggtctc
cgctgcgatgcctgctccgctggtttctacggcggcctgaccgcgccgggcggcggaggc
tgcgacgagtgtctatgtaacaacaacatcgaccctgctgacagtgacgcgtgtgacagt
gtgacgggcgaatgtttgcgttgcctccacaacacccagggaccccgctgtcagagctgt
aagcctggctactatggagacgcactggcccaggactgcaaagagtgctcctgtgaccgg
cagggaacggatgtgacccagtgccctctgggcagcccgtgtttctgtgacccgctgacg
ggtcagtgcccgtgtcgggcgggcgcggtgggcacgctgtgtgacgagtgtgccaccggc
ttctggaacattcagggagagtccgggtgccaaccgtgtaaatgtgaccctgctaactcc
ttcaataaccactgtgacaaggtgactggtcattgccagtgtcgtactgagtttggagga
agacagtgtgatgagtgtggggaaaatcactttgggaaccctgacctgcagtgtgtttcc
tgcgattgtaacatggagggtaccgaccgccccgcctgcaacccattgacgggtgagtgt
ctgtgccgcgttggtgtgatgggcatcttctgtgatgagtgtgcccctgggtatgaccaa
gtcttccccgcctgcctcccgtgccacccctgtgccgtcctgtgggcggacaacgtcacc
gacgtccaccgtgccgcccagaggatgcgcaccttcatccctccccaccgcgaacagctg
gagcctggacacagtcgtcagttgcaacgaatgctggagatgcactccaagctggactat
ctggggaacctgacagggagatccctacctcgggtgaaagacgtggagaagctgtgtgtc
ataatctcgaagctcaaagactccatagaccccaacgccatcatcgtggactcatcatct
cttctgaacactgagatcgacaacatccaccacgagttcaagatgctgttggataactta
aggaacaaaatcggcgaggctccaaaactagatctaaaagaaatgcaggaggccctggag
aagatccggaagcagcatgcagacttcatggctgatgagaagaaggtgaaggaggccgag
agggccctggagaactccatggacacacggcaggaaatcaaagaccatctgtccagctgc
agcatcttgggagacatggaggggctggagaagaaggtcaaggctctgagtgtggccaaa
ctcaacaaaaacatctgtggaggcccaggcgatgaggaatgctccaaatcagagtgtggg
ggtgcgctgtgtcgagacttcctgggacagagagaatgtgggggtcctacgtgcaagggc
agcttccctgtgagccacaatgccacaaaaacagctgagcaagtagagaatgaccttatc
gacctgctccaaaaactaaaggactccaagatcaagatcaatgaggccaaacaggtgacc
caaggcactcatgagcaggcagaggagctacagaagaagatcactgacagcaaggagaag
tataagagggagaagaatgacaccaaggacctcatcaatagggtcaaagactacctcaca
gatgagatggtggcgccagaggacatagagaatttggtcaaggttgttctggccatccag
ctgccgggctctccggacgacatccgctccatgatccagaacatccggggcgtgctgacc
aacttcattgagttcaaggaggatctgaaaaaactgaaggaccaagccaagacagcccag
gacctgctggagaaagctcaggctatcagggacagaaccagggctattgatgttacggat
ctcaagaaaaccatcacggacactgagaatacacaggacaaggttgagcaagacctggag
aaggctaaggaaagcaatggcgtggcgaacaagatgattaaagagattgagaagaaactg
aacaacatagagactaacttgaactctactagaactccagagatgctggaggagattgag
gttctgaagagcaagaccgagatgaacagagagcaggcggagcaggccaaagctgatgca
gatgcagccataggtgccactactgacgcagagaaggggcttgacaaggtgactgcgctg
tttgataggctaaagacgggaaacacaaaccagaccaataatgaagcggccaacgaacgc
ctgaagaacattactgtggaggcagagaaagttgcaaaagacatccaagataaaattcaa
caaattgacgacttggagaaaaagatccaagacttcatcagaaacaaagaggacaaggcc
aaggaggttgccatgttgctggagatggtagaagccctccaaaaggagattactgcgcgt
gtggatggttacattaactgtacctcctaa
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