Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408267
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Entry
139408267 CDS
T10872
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator-like
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla02010
ABC transporters
ocla04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
139408267
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
139408267
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139408267
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
139408267
Transporters [BR:
ocla02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
139408267
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CFTR_R
ABC_membrane
ABC_tran
SMC_N
AAA_21
DUF87
AAA_29
RsgA_GTPase
AAA_16
nSTAND_NTPase5
T2SSE
FtsK_SpoIIIE
nSTAND3
MMR_HSR1
AAA_23
NB-ARC
ATP-synt_ab
AAA_30
nSTAND1
DO-GTPase2
MeaB
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
139408267
NCBI-ProteinID:
XP_071008060
LinkDB
All DBs
Position
1:complement(47194895..47236126)
Genome browser
AA seq
1519 aa
AA seq
DB search
MQKSPVEDANFLSKYVFWWTSPLLRKGFRKKLDLTDVYKAPSFDLADNLSERLEREWDRE
VASAKKKPRLLRALSRCFLWPFVFYGILLYFGEASKAVQPQLLGRIIASFDPFHAPEREQ
GYYLALGLSLLFITRFLLLQPAIFGLHHLGMQIRIALFSLIYKKTLKLSSRVLDKISTGQ
LVSLMSAHLNKLDESLGLAHFVWITPLQCILCVGLIWELIEVNGFCALAALTLLGIVQAC
LSQKMGPHRQKRAGMISRRLALTSEIVENIHSVKAYGWEEVMETIIKNIRQDEMSLTRKI
GSLRYFYSASYFFSAILVIVSAIVPHALSKGIILRRIFTTASYCMVLRMTLTRQLPGSIQ
MWYDTLALVTKIEEYLCKEEYKVLEYNLTTTEIELVNVTASWDEGIGELFEKIKQENKAN
GHPNGDAGLFFTNLYVTPVLKNISLYLEKGQMLAVAGSTGSGKSSLLMMILGELVPSEGK
IRHSGRISFSPQTSWIMPGTIRDNILFGLTYDEFRYTSVIKACQLEEDLALLPEKDKTPL
MEGGVTLSGGQRARIGLARAVYKDADLYLLDSPFTHLDIVTEKEIFERCLCKLMSSKTRI
VVTSKLEHLKRADKILLLHNGVCYFYGSFSELQAKRPDFSSLLLGLEAYDNINAERRSSI
LTETLRRVSIDESAVFRGPEPIHQSFRQPTPLIICTNNGPQAITIAGGDGLTAAEKRKQS
IILNPLAPARKFSFIGAGSQKAQAPPPGSTTIEDAVRELSERKFSVVPEDDQIEESLPRG
NQYHHGLQHLSGQRRQSVLQFITNARGEGRREQLQTSFRKKLSVTPQCELASELDIYARR
LSKDSVYDISEDVDEQDMEQCFADERENVFDTTSWNTYLRYIFTNRNLVYVLIFIFLVFA
VEVAGSVLGIFLITDKIWTEEANPSAPNFVDQQHANASSPAVQKPVIVTPTSAYYIIYIY
VATSESVLALGFFRGLPLVHTLLTVSKRLHEQMLTAVLRAPMAVLNTMKTGRIMNRFTKD
MATIDDMLPLALFDLIQLTLIVLGAIFTVSIMRPYIFIAAIPLAVIFVVLRKYFLRTGQQ
LKQLEAEARSPIFSHLIISLKGLWTIRAFGRQSYFETLFHKALNTHTATWFHYLATLRWF
LFRCDIIFVFFFSAAVFIAVGTNQDKPGEIGIIVALAMLILGTFQWAVITSITVDGLMRS
VDRVFKFIDLPQEEPRPSGGGGKGRDLVIDNPHAQDCWPNQGHMDVQGLTVKYTEAGRSV
LQDLSFTVEGGQSVGVLGRTGSGKSTLLSALLRLASTDGEISIDGVSWNSVTLQTWRKAF
GVVPQKIFILTGTFRMNLDPHARYSDEELWRVAEEVGLKSVIEQFPDKLDFQLEDGGYVL
SNGHKQLMCLARSILSKARILLLDEPSAFLDPITLQVLRKTLKQSFSNCTVILSEHRVEP
LLECQSFLMIEGSSMKRYDSIQKLLNETSHLKQAMSAAERLKLFPLHRLNSSKRPPQSQP
PKITALQEVAEDEVQNTHL
NT seq
4560 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagtcacccgtggaagatgcaaacttcctctccaaatatgtattctggtggaca
tctccactgttgaggaagggcttcagaaagaagttggatttgaccgatgtttacaaagca
ccgtcgtttgatctggcggacaatctttctgaacgactggaaagagaatgggaccgagaa
gtggcatcggccaagaagaagcctcggcttctgcgggcgctctcccgttgtttcctctgg
ccttttgtgttctacggaatcctgctgtactttggggaggcgtcgaaggcagtgcagccc
cagctcctgggtcgtatcattgcctcgtttgacccctttcatgccccggagcgggagcag
ggctactacctggccctgggtctcagtcttctcttcatcactcgcttcctgctcctgcag
ccagccatctttgggctgcaccacctgggcatgcagatacgcatcgctctcttcagcctc
atctataagaagactctgaagctgtccagccgggtcctggacaagatcagcacaggtcag
ctagtcagcctgatgtcagcccacctcaacaagctggatgagagccttggcctggcccac
tttgtgtggatcacccctctgcagtgtatcctgtgtgtgggtttgatctgggaactgatt
gaggtgaatggtttctgtgccctggctgccctcaccctgctgggcatcgtacaggcctgc
ctctcacagaagatggggcctcacaggcagaaaagagcagggatgatcagtcgtcgcctg
gctctgacctccgagatagtagagaacatccactcagtgaaggcctacggctgggaggag
gtgatggagaccatcatcaagaacatcagacaggatgagatgtcattgacgcggaagatt
ggttctctgcgttacttctacagcgcctcctacttcttctctgccatcctggtcatcgtg
tcagccattgtgccacacgccctcagcaagggcattatcctgaggcggatcttcaccact
gcctcctactgcatggtgctccgtatgaccctcaccagacagctgcccggctccatacag
atgtggtacgacacgctggcgctggtcacaaagatagaggagtacctctgcaaagaggag
tacaaagtattggagtacaacctgaccaccactgagatagagttggtgaatgtgaccgcc
tcctgggatgaaggtatcggggagctctttgagaaaattaagcaggagaacaaggccaac
ggccaccctaacggtgacgcagggttgttcttcacaaacctgtatgtcacacccgtcctc
aagaacatcagcctgtacctggagaagggacagatgctggccgtggctggatccaccggc
tctgggaagagttccctgctgatgatgatcctgggggagctggtcccgtcggaggggaag
atcagacacagtgggcggatctccttctccccccagacctcctggatcatgcccggaacc
atccgtgacaacatcctgtttggcctgacctacgacgagttccgctacacctctgtcatc
aaggcctgtcagctggaggaggatctggccctgctgccggagaaagacaagacgcccctt
atggagggaggggtgaccctaagtggaggtcagagggcgaggataggcctggccagagct
gtgtataaagacgccgacctctacctactggattcaccttttacccacctggacattgtg
actgagaaagagatctttgagaggtgtctgtgtaaactgatgtcttccaagactcgcatc
gtggtcactagtaagctggagcacctgaagagagcggacaagatccttctgcttcacaac
ggagtgtgttacttctacggctccttctccgagctgcaggccaagagaccagacttcagc
tccctgctcctgggcctggaggcctacgacaacatcaacgccgaacgccgcagctccatc
ctcaccgagaccctccgacgcgtctctatcgatgaatccgccgtcttccgtggccccgaa
cccatccaccagtccttccgccagcccacgccactgatcatctgtacaaacaatggtcct
caagccatcaccattgccgggggcgacggtctcacagcagcggaaaaacgtaaacagtca
attatccttaatccgttagcgccggcccgtaaattctccttcatcggtgcggggtcccag
aaagcccaggctcctccacccgggtccaccactatcgaggatgccgtgcgagagctgtca
gagaggaagttctcagtggtgcccgaggacgatcagattgaagagtcgctgccgcggggg
aaccagtaccatcatggcctgcagcacctgagcgggcagcgccgccagtctgtgctgcag
ttcatcaccaacgcccggggggagggcaggagggagcagctccagacgtccttcaggaag
aagctgtccgtcacgccgcagtgcgagctggcctctgagctggacatctacgcacgacgc
ctgtccaaagacagtgtctatgacatcagcgaggatgtggacgagcaggatatggagcaa
tgctttgcagacgagcgcgagaacgtgttcgacacgacgtcgtggaacacctacctgcgt
tacatcttcaccaacaggaacctcgtctacgtcctcatcttcatcttcctcgtcttcgct
gtagaggttgctggctctgtcctggggatatttcttatcacagataagatctggacagag
gaggccaacccgtcggcgcctaacttcgtagaccagcagcacgccaacgcctcgtcgccc
gccgtccaaaagccagtcatcgtcacgccgaccagcgcctattacatcatctacatctac
gtggcgacgtcggagagcgttctggcgctggggttcttcagaggcctgccattggtccac
actttactgaccgtgtccaagaggctgcatgaacagatgctgaccgctgtgctcagggcc
cccatggctgtactcaacactatgaagactggtcggatcatgaacaggttcaccaaagac
atggccaccatcgacgacatgcttccccttgcactgtttgacctcatccagttaactctg
atcgtgctgggtgccatattcactgtgtccatcatgaggccgtacatcttcattgccgcg
atcccattggccgtcatattcgtggttctgaggaagtactttctgcgtacgggacagcag
ctcaaacaactggaggctgaggcccgtagcccaatattctcccacctcatcatctctctg
aagggtctgtggactatacgtgcatttggtcgtcagtcctactttgagacgttgttccac
aaggccctgaacacccacacggccacctggttccactacctcgcaacgctgcgatggttc
ctcttccgctgtgacatcatcttcgtcttcttcttctctgccgcagtcttcatcgccgtg
ggaaccaaccaggacaagcctggggagattggcatcatcgtggccttagccatgctcatc
cttgggacgttccaatgggctgtcattaccagcatcactgtggacggactgatgcgatcg
gtagaccgggtcttcaagttcatcgacctgcctcaagaggagcccagacccagcggtgga
ggtggtaaaggaagagacctggtgatcgacaaccctcacgcccaggactgctggcccaac
cagggccacatggacgtccaaggactgaccgtcaaatacacagaggctggacgctccgtc
ctgcaggacctctccttcactgtggaaggaggacagagtgtgggtgtgttggggaggacg
ggctcaggaaagagcaccttgctatcggctctcctgcggctggcctctacagacggagag
atctccatcgatggggtctcctggaactcggtcaccctacagacctggaggaaagccttc
ggcgtggtgccacagaaaatcttcatcctgactggtacattccgtatgaacctggatcca
cacgctcgctacagtgacgaggaactgtggcgtgtggctgaggaggtgggtctgaagtcc
gtgatcgagcagttcccagacaagctggacttccagctggaggacgggggttacgtcctg
agcaacggacacaagcagctcatgtgtctggcccgctccatcctcagcaaggcccgcata
ctgctgctagacgaacccagcgccttcctcgaccccataacgttgcaggtcctgaggaag
accctgaaacagtcgttctccaactgtacagtcatactgtcagaacacagagtggaacca
ctgctggagtgccagtccttcctgatgatcgagggcagttctatgaagaggtacgactcc
attcagaagctgttgaatgagaccagccacctgaagcaggccatgagtgctgctgagcgc
ctcaaactcttccccctgcaccgcctcaactccagcaagcgaccccctcaatcccagccg
cccaagatcaccgccctgcaggaggtggctgaggacgaggtccagaacacgcatctttaa
DBGET
integrated database retrieval system
