Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408287
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Entry
139408287 CDS
T10872
Name
(RefSeq) fibrillin-2
KO
K23342
fibrillin 2/3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139408287
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139408287
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139408287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
FXa_inhibition
EGF
TB
hEGF
EGF_3
Fibrillin_U_N
Plasmod_Pvs28
EGF_FBN_1st
Motif
Other DBs
NCBI-GeneID:
139408287
NCBI-ProteinID:
XP_071008098
LinkDB
All DBs
Position
5:complement(7989667..8221409)
Genome browser
AA seq
2891 aa
AA seq
DB search
MWTKRMFSCLVGLVALTGFLVVKVTGQDPPTLGGKTLLKVDGDQTAASNRVRRRGKQESL
RGPNVCGSRFHSYCCPGWKTLPGGNQCIVPICRNSCGDGFCSRPNMCTCPSGQIAPTCGT
KSTQQCNIRCMNGGLCAEDHCQCQKGFSGSYCGQPVCDSKCQNGGRCIGPNRCACVYGFT
GPQCERDYRTGPCFTKVSNQMCQGQVSGIVCTKTLCCATVGRAWGHPCEMCPAQPQPCRR
GFIPNIRTGACQDVDECQAIPGLCQGGNCINTVGSYECKCPAGHRQKEGSQKCEDVDECV
TISRMCDGGQCFNSVGSYSCVCPSGYIPSPDKTRCIDQQAGSCFGGLLNGRCAQELPGLF
SKATCCCDSGRCWARGALPEICPARRSEEYRRLCVQGVLPYPDGDFGGRPNPMNPLNPLI
PQRPNGGNDPSSPNGGYDPSRPSSGYDPTLNGQGVPNGNGQRPDLGTATLNQTINVCKQL
PNLCLHSRCILVGSSYRCECNNGYALDTRQECADVDECSSDPCPNGDCVNTAGSFYCKCH
TGFQRNPEKQVCIDIDECLNNGVLCKNGRCLNMDGSFQCICNAGFQLTPDGRNCVDHDEC
AGTNMCLNGMCINEDGSFKCLCKPGFTLASSGRYCTDIDECQTPGMCMNGRCVNTEGSFK
CECLAGLAVGADGRFCVDTHMRSTCYGAIKKGVCVRPFQGAVTKSECCCANTDYGFGEPC
VSCPAKNSAEFQALCGSGIGFSVDGTDINECALNPEICPNGVCENLRGSFRCFCNTGYES
DNTGKTCVDIDECMVNRLLCDNGLCRNIPGSYSCTCPKGYLFRPDSETCEDVNECENRPC
SNGQCRNTAGSFACECSPGSKLDTTGLICIDSLKGTCWLNIQDGRCEVNINGGTLKSECC
ATLGAAWGSPCEQCEKDSICSRGYARPRGVKCEDVNECVVFPGVCPNGYCVNTKGSFKCQ
CPDGLTLDSSGRVCVDVRSEHCYLTWEEDSCAKPVPGRFRMDACCCTMGAAWGKECEACP
LPGTSEYDALCPRGPGFANRGDVLTGRPFYKDINECKVFPSMCVHGKCRNTIGSFRCHCA
GGFSLDMEERNCTDIDECRISPDLCGQGVCVNTPGSFECECSEGYESGFMMMKNCMDIDE
CEREPSLCRGGSCENTEGSYECVCPQGHQLTVDGAACEDYNECEQSVSLCRNGQCVNVAG
TYHCSCDSGYQATPDRQSCIDIDECTIENGGCDLHCTNSEGSYTCSCNNGYALMTDERSC
SDVDECEQEPDICDGGQCTNIPGDYHCLCYDGFMAALNMRLCIGIYTHTHTHTHTHTHTH
TQNTKGSFICHCQPGYSVKKGTSGCTDMDECEIGAHNCAVNANCINTPGDFHCSCRVGWV
GNGVNCIDMDECTNGTSHCSANAKCLNTPGSYRCACAEGFTGDGFTCSDEDECAENVNLC
ENGQCLNTLGGYRCECEMGFTPAPDRRTCQDIDECTFQNICVFGTCKNIPGMFRCICNDG
YELDRSGGNCTDVDECQDPINCVNGLCVNIDGSYECNCPPDFELNPTGVGCVDTRVGNCF
LEHGPRGDRRSCSVEVGVGVSRSSCCCSLGRAWGNPCELCSAPNTTDYNTLCPGGEGFRP
NPVTIILEDIDECLELPGLCQGGNCVNTFGSFSCDCPPGYYLNIDSRICEDIDECVVNPV
ICGPGTCYNTLGNYTCVCPQDYMQINGGNNCMDMRKSLCYRNFNGTTCENELPFNLTHKI
CCCAYNVGKAWNKPCEACPTPGTGDYKTLCGNIIPGFKLDIETGKAVDINECREIPGICA
SGVCINQIGSFRCECPTGFSYNDLLIICEDIDECSSVENLCQRNADCINSPGSYRCECSE
GFNLSPIGACNDRNECLEITNVCSHGECVDIQGGYECRCHHGFKATPNRKMCTDVDECER
FPCRNGTCKNTVGSFNCLCHTGFEFSHHNDCMDIDECQTSFGTLCRKGQCINSVGSFQCL
CEEGYKLTPDAKNCMDVNECMIFPGTCTPGTCQNLDGTFRCLCPPGYIVQNEQCIDVNEC
EEDPNICLFGSCFNNPGSFQCVCRPGFILSENSRRCYDTRESYCFTRFENGKCSVPQAFN
TSKAKCCCSTMPKEGWGDPCELCPKKQDVAFQDLCPFGHGIIPGTGDTRIDLNECVENPG
ICNNGHCINTDGSFRCECPIGYTLNYTGVHCIDVDECLVGNLCGNGTCSNVIGGFECNCE
EGFEPGPMMTCEDVNECAISPLLCAFRCINTFGGYECMCPGGYTLRENQRMCQDLDECSE
GLHDCESRGMTCKNLIGTFMCVCPSGMVRHLDNEVCEDENECRSKPGICENGRCINTIGS
YICECGGGYESDSTRTQCLDYREGFCFTEVLMTMCQMSSSSRTPTTKSQCCCDGGRGWGN
QCELCPLAGTAGYRKLCPHGPGYATDGMDIDECKVHIDTCKNGRCINTMGSYRCHCKLGY
TSTITGMACVDLDECVMSPKPCNFICKNTEGSYTCSCPRGYVLQEDGRTCKDLDECQTKR
HNCQFMCVNTVGGFTCKCPPGFTQHHTACIDNNECVGEPSLCGTKGICQNSPGSFNCACQ
RGYELDDTGLHCDDVNECDSNDRCQHGCQNMLGGYRCNCPQGYTQHYQWNQCVDENECSN
PGSCGSASCYNTLGSFKCACPSGYSFDSFSSSCQDVNECSNKNPCSYGCSNTEGGYLCGC
PLGYFRMGQGHCVSGLGFGKGQYEGPEIEDNTLSPETCYECKINDYPKKHGRKRRDANGT
QPIEHNQVSLASLDMEVPVTLLLNVSQLNPKEHILELVPAIKPLVGHVHYVITSGNRKGL
FRIQQRDGLCYLHSTKRKGALAAPQDHTLEIASLPLYGKAQFKELEDRRDQDYLTGELGE
NLRMRLHIRLQ
NT seq
8676 nt
NT seq
+upstream
nt +downstream
nt
atgtggaccaagaggatgttttcgtgcttggttggactggtggcgttgacgggttttctc
gtggtaaaagtaacaggacaagaccctccgacgctcggggggaaaacgcttctcaaggtg
gatggagatcagacggctgcctcaaatcgagtgaggagaagaggaaaacaggagtcccta
cgagggcccaatgtgtgtggatcacgtttccactcctactgttgtccaggctggaaaacc
ttgcccgggggcaaccagtgtatcgtgcccatttgcaggaacagctgtggcgatggattt
tgctcacggcccaacatgtgcacatgtcccagtggccaaattgcaccaacctgtggcaca
aagtccacccagcagtgtaacatcaggtgtatgaacggtggcctctgtgccgaggaccac
tgtcagtgtcagaagggtttctcaggctcctactgtggacaacccgtctgcgatagtaaa
tgccaaaacggcgggcgctgcattggacccaaccggtgcgcctgtgtctacgggttcact
gggccccagtgtgagagagactacaggacaggcccgtgcttcaccaaggtcagcaaccag
atgtgccagggccaggtgagtggcatcgtgtgcaccaagaccctgtgctgtgccacggtg
gggcgtgcctggggacacccctgcgagatgtgtccggcccagccccagccatgccgccga
ggcttcatccccaacatacgcaccggagcctgccaggatgttgacgagtgccaggccatc
ccgggactctgccagggaggaaattgcatcaacaccgtgggttcgtacgagtgcaagtgt
ccagctggccacaggcagaaagagggctcccagaagtgcgaggatgtggatgagtgtgtc
accatttcccgcatgtgtgacggaggacagtgtttcaactcggtgggcagttactcttgt
gtttgtccctctggctacatcccatctcctgacaaaactcgctgcattgaccagcaggca
ggctcgtgtttcgggggtctgctgaacgggcgctgtgcccaggagctgcccggcctcttc
agtaaggccacatgctgctgtgacagtggacgctgctgggcacgaggggccctgcctgaa
atatgccccgcccgacgatcagaggagtaccgccggctgtgtgtccaaggagtcctacct
tacccagatggagactttggagggagacccaaccccatgaatcctctaaatcctttgatc
cctcaaagacccaatggtggcaacgacccgtccagccccaatggtggctatgatccatct
agacccagcagtggctacgatccaacactgaatggccaaggggttcctaatggaaatgga
caaaggccagacttaggcacagcgactctgaaccagacgataaacgtctgtaagcagctg
cccaacctgtgtctgcacagtcgctgcatcctcgtgggctctagctaccgctgcgagtgc
aataacggctacgccctggacactcgccaagaatgtgcagatgtagatgagtgttcctcc
gacccgtgccccaatggggactgtgtgaacacggccggttccttctactgcaagtgccac
acagggttccaaagaaatccagagaagcaggtctgcatcgacattgacgagtgcctgaac
aacggggttctgtgtaagaacggccgctgtctcaacatggatggaagcttccagtgtatc
tgtaacgcaggcttccagctaaccccagacggcaggaactgtgtcgaccatgacgagtgc
gccggcaccaacatgtgtctgaacggcatgtgtatcaacgaggacggtagcttcaagtgc
ctgtgcaaacccggcttcaccctggcttccagtgggcgctactgcacagatattgatgag
tgtcagactccaggcatgtgtatgaacggccgctgtgtcaacactgagggctccttcaag
tgtgagtgcctggcagggctggctgtgggggcggatggacgcttctgtgtagacacacac
atgcgcagcacctgctacggcgccataaagaaaggtgtgtgcgtgcgtcccttccaggga
gccgtcaccaagtcggagtgctgctgtgccaacaccgactacggctttggagagccctgt
gtgtcttgcccagccaagaactcagctgagttccaggctctgtgtggaagtggaatcggc
ttctctgtggatggaacagacatcaatgagtgtgcactgaacccagagatctgtcccaat
ggagtgtgtgagaacctaagaggcagtttccgctgcttctgtaacactggctacgagtct
gacaacacgggcaagacctgtgtggacattgacgagtgcatggtgaaccggctcctctgc
gacaacggactgtgtcggaacattccaggcagctacagctgcacctgccccaagggctac
ctcttcaggccggactctgagacatgcgaagatgtgaatgagtgtgaaaaccgcccctgt
tctaacggacagtgtaggaacacagccggctcctttgcctgcgagtgctcccctgggagc
aagctggacaccacaggactcatctgcattgacagcctgaaggggacctgttggctgaat
atccaagatggccgctgcgaggtcaacatcaacggcggcaccctcaagtcagagtgctgt
gccaccctgggcgctgcctggggaagtccctgtgagcagtgtgagaaagattccatctgt
tcaaggggctacgccaggccgcgaggagtcaaatgtgaagacgtgaacgagtgcgtggtc
ttcccaggtgtgtgtcccaatgggtactgtgtaaacaccaagggctccttcaagtgccag
tgtcctgatggtctcacactggactccagtggccgagtgtgtgtggacgtgcggtctgag
cactgttacctgacgtgggaagaggactcgtgtgccaagcccgtgcccggccgtttccgc
atggacgcctgttgctgcacgatgggcgccgcctgggggaaggagtgtgaggcgtgcccc
ctgcctggcacttccgagtatgacgccctctgcccccgaggcccaggcttcgccaaccga
ggagacgtcctcaccggaaggcccttctataaagacatcaatgagtgtaaggtgttcccc
agcatgtgtgtccatggaaagtgtcgcaacaccataggcagtttcaggtgccactgcgcc
ggaggattttccctcgatatggaagaacgcaactgcacagacatagatgagtgtcgtatc
tctccggacctgtgtggccaaggggtttgtgtcaacactccgggtagttttgagtgtgag
tgttccgagggctatgagagtggcttcatgatgatgaagaactgcatggacatagacgag
tgtgagcgggaaccgtccctgtgtcgtggggggtcttgtgagaacacagagggcagctac
gagtgtgtttgcccccagggacaccagctcactgtggacggggcagcgtgcgaggattac
aacgagtgcgagcagagcgtcagcttgtgtcggaacggccagtgtgtgaatgtggccggt
acctaccactgctcatgtgactctggttaccaagcaactcctgacagacagagctgcata
gatattgatgagtgtaccattgagaatggcggctgtgacctgcactgcaccaactcagag
gggagttatacgtgtagctgcaacaatggctatgcactgatgacagacgagagaagctgt
tctgatgtggatgagtgtgagcaggagcctgacatatgtgacggaggacagtgcactaac
atcccaggggattaccactgtctgtgctacgacggctttatggctgccctgaacatgagg
ctctgcataggtatctacacacacacacacacacacacacacacacacacacacacacac
acacagaacaccaagggatcgttcatctgccactgtcagcctggctactcagtcaagaag
ggaacttctggatgtacagacatggatgagtgtgagatcggggctcacaactgtgccgtc
aacgccaactgtatcaacacccccggggacttccactgttcctgtcgtgtcggctgggtg
ggaaacggagtcaactgtatagatatggatgagtgcaccaatggaacaagccactgcagt
gccaacgccaagtgtctgaacacacccggctcctaccgctgcgcctgcgctgagggcttc
actggagacggcttcacctgttcagacgaggatgagtgtgcagagaacgtgaatctgtgt
gagaacggccagtgtctcaacaccctggggggttaccgctgtgagtgtgagatgggcttc
acccctgccccggacagacgcacctgccaagacattgacgagtgtaccttccagaatatc
tgtgtgtttggcacgtgtaagaacatccccggcatgttccgctgtatctgtaacgacggc
tatgagctggaccgctccggaggcaactgtacagacgtggacgagtgccaggaccccatc
aactgtgtgaacgggctgtgtgtgaacatcgatggctcctacgagtgtaactgtcctccg
gactttgaactcaaccctacaggggtgggatgtgtagacacacgtgtggggaactgtttc
ctggagcatggacccaggggtgacaggcggtcctgcagtgtggaggtgggagtgggagtc
agccgctcctcctgctgctgctccctggggcgtgcctggggaaacccctgtgaactctgc
tccgctcccaacaccacggactataatacactctgcccaggaggagagggtttcaggccc
aacccagtcaccatcatactagaagacatagatgagtgtttggagctgccaggcctgtgt
cagggaggaaactgtgtcaacacgtttggcagcttctcgtgtgactgtcctcctggctac
tatctcaacatagacagtcgcatctgtgaagacattgacgagtgtgtggtgaatcctgta
atctgcggtcctggcacctgctacaacacactggggaactacacctgtgtgtgtccacag
gattacatgcagatcaacgggggaaacaactgcatggacatgagaaagagcctgtgctac
aggaacttcaacggcacaacatgtgagaacgagctgcccttcaacctcacccacaagatc
tgctgctgtgcctataacgtgggcaaggcctggaacaagccctgcgaagcctgcccaacc
cccgggactggtgactataagacactttgtggaaacatcatccctggcttcaaactggat
attgaaactgggaaagcagtggatattaatgagtgcagagaaattccaggtatctgtgct
agcggggtctgtatcaaccagatagggagcttccgctgcgagtgtcccaccggcttcagc
tacaacgacctgctcatcatctgtgaagacatcgatgaatgtagcagtgtggagaacctg
tgccagaggaacgctgactgtatcaacagccctgggagctaccgctgtgaatgctcagag
ggcttcaatctctcccccataggagcctgcaacgaccgcaacgagtgtctggagatcacc
aacgtgtgtagccatggcgagtgtgtggacatccaggggggctacgagtgcaggtgccac
cacggcttcaaggctacgcccaaccgcaagatgtgcacggatgtcgacgagtgcgagcgg
tttccttgtcgcaacggaacctgcaagaacacagtgggctccttcaactgtctgtgtcac
accgggtttgagttctcacaccacaacgactgcatggatattgatgagtgtcagacatcc
tttggcacgctgtgcaggaaaggccagtgtatcaacagtgtgggctccttccaatgtctg
tgtgaggagggctacaagctaacccctgatgccaagaattgtatggatgtgaacgagtgt
atgatcttccccgggacctgcactcctggaacctgccagaacctggacggcaccttccgt
tgtctctgtcccccgggttacatagtccagaacgagcagtgtatagacgtcaacgagtgt
gaagaagaccctaacatctgcctgtttggctcctgcttcaacaacccgggcagtttccag
tgtgtgtgcaggcctggcttcatactgtctgagaacagtcgcaggtgttacgacaccaga
gagagttactgcttcacccgctttgagaacggcaagtgttcggtgcctcaggccttcaac
accagcaaggcaaagtgttgctgcagcaccatgcccaaggagggctggggagacccctgt
gaactttgtcccaagaagcaggacgtggcgttccaggacctgtgtcccttcggccatggc
ataatccctgggactggagacacacgcatagacttgaatgagtgtgtggagaacccaggc
atctgtaacaacggacactgtatcaacacagacggctccttccgctgcgagtgtccaata
ggctacactctcaactacactggggtacactgcatcgatgttgacgagtgtttggtgggg
aacctatgtggcaacgggacgtgctctaacgtgattggagggttcgagtgtaactgtgag
gagggctttgagccaggccccatgatgacctgtgaagacgtcaacgagtgtgcaatcagc
cccctactgtgtgcattccgctgcatcaacaccttcggaggatacgagtgcatgtgtccc
ggtggctacacactgagagagaaccagaggatgtgccaggatctggatgagtgttccgag
gggctccacgactgtgagtccagaggcatgacctgcaagaacctcatcggcaccttcatg
tgtgtgtgcccgtcggggatggtgcggcacctggacaacgaagtgtgcgaggatgagaat
gagtgtcgtagcaagccgggcatctgtgagaatggtcgttgtatcaacacgataggcagc
tacatatgtgagtgtggaggcggatatgagtctgactctacacggacacagtgtctcgac
tacagggagggcttctgctttaccgaggtgctcatgactatgtgccagatgtcttccagc
agccggacacccaccaccaagtcccagtgctgctgtgacggaggccgcggctggggtaac
cagtgtgagctctgtcccctggctggcacggcaggctacaggaagctctgtccccacggc
ccgggatacgccaccgacggcatggatatagacgagtgtaaggtacatatagacacgtgt
aagaatggacgctgcatcaacaccatgggatcctaccgctgccactgcaaactgggctac
acctccaccatcactggaatggcctgcgtggatctggatgagtgtgtcatgtcccccaag
ccgtgtaatttcatctgtaagaacaccgagggaagttacacttgctcctgtccccgtggt
tacgtgctccaagaggacggcaggacctgcaaagatttggacgagtgccagaccaagagg
cacaactgtcagttcatgtgtgtcaacaccgtgggcggattcacctgcaagtgtccccct
ggcttcacccagcaccacactgcatgcatagataataatgagtgtgtcggggaaccctcg
ctgtgtggcaccaagggcatctgtcagaactcccctggtagcttcaactgtgcgtgccaa
cggggttacgaactggacgacaccggactgcactgtgatgacgtgaacgagtgtgacagt
aacgacaggtgccaacatggctgccagaacatgctgggcggctaccgttgtaactgccct
cagggctacacacagcactaccagtggaaccagtgtgtggatgagaacgagtgctccaac
ccgggcagctgtggatcggcctcctgttacaacacgctaggcagcttcaagtgtgcctgc
ccctcaggctacagcttcgactcattcagcagcagctgtcaggatgtcaacgagtgctcc
aacaagaacccctgtagctacggctgctccaacacagagggaggctacctgtgtggttgc
ccgctgggctattttcgcatgggccaaggtcactgtgtgtcaggcttgggctttgggaag
ggccagtatgaggggccagagatagaagacaacactctctccccagagacgtgctacgag
tgtaagatcaacgactaccccaagaagcacggccgcaagaggcgcgacgccaatggaacg
caacccatagagcacaaccaggtgagcctagccagtctggacatggaagttcctgtcacc
ctgctgctcaacgtgtcccagctcaaccccaaagagcacatcctggagctggtgcctgcc
atcaagcccttggtgggccacgtgcactacgtcatcaccagcggcaaccgcaaaggcctg
ttccgcatccagcagcgtgacggcctctgctacctacacagcaccaagaggaagggggca
ctggcggcaccgcaggatcacacgctggagatcgccagcttgccgctctacggcaaagcc
cagttcaaagagctggaggaccgccgggaccaagactaccttacgggggaactgggggag
aacctgcgcatgaggctgcacatacgactgcaatag
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integrated database retrieval system
