Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408312
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Entry
139408312 CDS
T10872
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139408312
03036 Chromosome and associated proteins [BR:
ocla03036
]
139408312
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
139408312
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
139408312
SLIK complex
139408312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
139408312
NCBI-ProteinID:
XP_071008140
LinkDB
All DBs
Position
5:9694227..9741494
Genome browser
AA seq
1800 aa
AA seq
DB search
MAGRSEDEGVSNSSGESSNSDDESGSGSGSGSSSSSSSSSSSGSGSGSGSDSGSQSDSDS
GKSKEKNEPENKAKIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQQSSSNSGSDSSSS
EDSDDDSSGKRRKSGSGSSSGSGSGSGSGSGSDSSAQEQEHSEESDDYEPSHKVKSRKLP
TKANARNGKKSNVQRKKPSAGSSSDDDYDGKKSSSNQGPRRQATQNVSYKEDEEQKTDSD
DLVEVCGEDVPPPDEDEFETLERVMETRIGRRGATGGTTTVYAVEADGDPNANFNPNKEA
GEQQYLFKWKGWSHIHNTWETEETLKLQNVKGMKKLDNFKKKESDKKKWIKCSSPEDVEY
FNCQQELMDDLHSQYQLVERIIGHSNQKSAAGFPDYLCKWQGLSYSECSWEDGALISRKY
QKSIDDYMRRNQSKTIPSRDCKVLKQRPRFIPMKKQPSYIGGEGLQLRDYQLDSLNWMAH
SWCKGNSCILADEMGLGKTIQTISFLNYQFHEHQLYGPFLLVVPLSTLVSWQREIQLWAP
LMNVVVYLGDISSRGMIRTHEWMHVQNKRLKFNILLTTYEILLKDKGFLGNVPWAFIGVD
EAHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWEIFEEE
HGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYKWILTRNY
KALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDSEFYNKQEALQHLIRSSGKLVLLD
KLLLRLRERGHRVLIFSQMVRMLDILAEYLKSRQFLFQRLDGSIKGEMRKQALDHFNAEG
SEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIYRLVT
KSSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGTAPSSATPFNKEELSAILKFGAE
ELFKEQEGEEQEPQDMDIDDILKRAETRENDPGPSTVGEELLSQFKVANFSMMEEEEIVM
DSERHHRGWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQVNFNGSESRRSRNRR
YSGSDSDSVSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARD
AELVDKSEHDLKRLAETVHNGCLKTLRENPCGPEKTSGGRRGKVKGPTFRISGVQVNAKL
VISHEEELAPLHKAIPADPDERKRYTIPCHSKAAHFDIDWGKEDDSSLLIGIYEYGYGSW
EMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQRQAGTANWRK
RKPRSKKTKAVKPAKVDEVVKSPSSTPHSDKSSEDEIEEEKEVVPVKLPPRRGRTERVVV
KEEPEPEEEPEPEEEKEPKEREMKKEVKKEKKEESREVKEKDLKEKKETKPVDPVHEQEE
VTGEKPSEVKTEVREKVKKTCDTPVHITAGGENISEESEELDQKTFSVCKERMRPVKAAL
KQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTEF
DARKLHKLYKHAIKKRQENAQAADGITSTVNTHGFKHADIERLKDNSHHDDSSRDSYSSE
RHHSASRYHEDRDSRDRHTSDPYSRMSGSGGDSRKRPYSAFSNGKDHRDHYRSDRQDSRY
YSDSKHRKVDEHRSGRDGRMDSKERSHSDHRSHSEHHSGSDYSSGHHKSSSRGDSYRYHA
DWQMDQRASASGPRSPRDQRSPRDQRSPYDGRSPLGHRSPFEYSSDHKSTPEQIWSSRKT
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atggctggaagaagtgaagacgagggtgtgagcaacagcagtggagagtcaagcaactcg
gacgatgagtccgggtcgggctctggatcgggctccagctctagttccagttccagtagc
agctcaggaagcggctcaggaagcggctcagactccggcagccagtccgattccgactct
gggaaatccaaggagaagaacgaaccagaaaacaaagccaagatcgacggagccgagttc
tggaagtccaaccccagtatcctagcagttcaaaggtcagctatgctcaggaaacagcaa
ctccagcagcagcagcaacaacagagctcttcaaacagtggatcggattcgtcgagcagt
gaggattcggatgacgactcgagtggaaagagaagaaaatcgggttcaggatcgtcctcc
gggtctggatcgggttctggaagtggttccggttctgactcgtcagcacaggaacaggag
cacagtgaagagtcggatgattacgagccgagtcacaaagtcaaaagcaggaagcttcca
accaaggccaacgccagaaacggcaagaagagcaatgtgcagaggaaaaaaccctctgcg
ggctcatcctcggacgacgattacgacggcaagaagtcgtcgtcgaaccaggggcccagg
cgccaggccacgcagaacgtcagctacaaggaggacgaggagcagaagactgactctgac
gacctggtggaggtgtgcggggaggatgtgcctccgccggacgaggatgagtttgagacc
ctggagcgcgtgatggagacgcggatagggaggagaggagcgactggaggcaccaccaca
gtgtacgcagtggaggcggacggagaccccaacgccaacttcaaccccaacaaggaggcg
ggcgagcagcagtacctgttcaagtggaaaggctggtcccatatccacaacacctgggag
acggaggagacgctgaagctgcagaacgtcaagggcatgaagaaactagacaacttcaag
aagaaggaatcggacaagaagaaatggataaaatgttcttcaccagaggatgtggaatac
ttcaactgtcaacaggaactcatggacgacttacactcacaatatcagctggtggagagg
ataattgggcattcaaatcagaagtcggcggccggttttccggactacctgtgcaagtgg
cagggcctgtcgtactccgagtgcagctgggaggacggagccctcatctccagaaagtac
cagaagagcatagatgactatatgcgcagaaaccagtccaagaccattccctccagagac
tgcaaggtgttgaaacagaggccgagatttattcccatgaagaaacagccgtcctatatc
ggtggagaaggactgcagctccgagactaccagttagacagcttgaactggatggctcac
tcatggtgcaaggggaacagttgcatcctggcagatgagatgggcctgggaaaaaccatc
cagaccatctccttcctcaactaccagttccatgaacaccagctgtacggaccattcctg
ctggtggtgcccctgtccacactcgtctcctggcagagagagatccaactgtgggccccg
ctcatgaacgtggtggtctacctgggtgacattagcagccggggcatgatcagaacacat
gaatggatgcacgttcagaacaagagactcaagtttaacatcctgctaacaacatatgaa
attctcctaaaagataagggattcctggggaacgtgccatgggccttcatcggcgtggat
gaggcccaccggctgaagaacgacgactcgctcctttataagaccatgatggacttcaag
tccaaccaccggctgctcatcaccggcacgccgctgcagaactcactcaaagagctctgg
tccctgctgcacttcatcatgcccgaaaagttccactcctgggagatatttgaggaggaa
catgggaagggtagggactctggctacaccagtctacacaaggagctggagcccttcctg
ctgcgtagagtcaagaaggatgtggagaagtctcttcctgctaaagtggagcagatcctc
agagtggagatgagcgccattcagaaacagtactacaagtggattttgacgaggaactac
aaggccctgagtaaaggtaccaaaggtagcacgtctggcttccttaacatcatgatggag
ctgaagaagtgctgcaaccactgctatctcatcaagcccccggaggacagcgagttctac
aacaaacaggaggccttacagcacctaatccggagcagtgggaagctggtgctgctggac
aagctgctgctgcgtctgcgggagcgtggccaccgtgtgctcatcttctcccaaatggtc
cggatgctggacatcctggccgagtacctgaagagccgccagttcctcttccagagattg
gacggctccatcaagggagagatgaggaaacaggcactggaccatttcaacgctgagggc
tctgaggatttctgcttcttgttgtcaacgcgggcgggcggtctgggcatcaacctggcg
tcggccgacacggtggtcatctttgactctgactggaacccacagaatgacctgcaggcc
caggccagagcccacaggattggccagaagagacaggtgaacatctaccgcctggtgact
aagagctcggtggaggaggagatcattgagcgggccaagaagaagatggtgctggaccat
ctagtcatccagaggatggacaccacgggcaagacggtcctccacaccggcaccgccccc
tccagtgccactccgttcaacaaggaggagctgtcggccattttgaagtttggtgccgag
gagctgttcaaggagcaggagggggaggagcaggagcctcaggatatggacatcgacgat
atcctgaagagagccgagaccagagagaatgaccccggcccctccactgttggagaggag
ctgctctcacagttcaaggtggccaacttctccatgatggaggaggaggagatcgtcatg
gattctgagcgccaccatcggggctgggatgacatcatccctgaggagcagcggcggcgg
atggaggaggaggagaggcagaaagagctggaggagatctacctgctgccccgcatgagg
aactgtgccaaacaggtcaactttaacggcagtgagagccggcgtagtagaaacagacgg
tattccggctccgacagcgactccgtctcggatcgcaagaggcccaagaaacgaggacga
cctcggaccattccacgagaaaacatcaagggcttcagcgatgctgagatacgaagattt
atcaagagctacaaaaagtttggtggaccacttgaaagactggatgctattgcccgtgat
gccgaactagtggacaagtctgaacatgacctgaagcgtctggcggagacggttcacaac
ggctgtctgaagactctcagggagaacccctgtggaccagagaagacgtcaggaggcaga
agagggaaagtgaaaggccctacgttcaggatctcgggagtccaggtgaacgccaagctg
gtgatctcccacgaggaggagctggcgccgctccacaaagccattcctgccgaccccgat
gagaggaagaggtacacaattccatgccactccaaggcagcacactttgacattgattgg
ggcaaggaggacgactctagcctgctcataggaatctacgagtatggttacggcagctgg
gaaatgattaaaatggaccctgacctcaacctgacacacaagctcctaccagacgaccct
gacaagaagccgcaggccaagcaactgcagacgagagcagactatcttatcaaattactg
agcaaggacctggccaaaaaggaagcacagaggcaagcagggacggccaattggaggaag
aggaaaccgaggagtaagaagaccaaagctgtgaagccagccaaggtggacgaagtggtg
aagagtccgtcctctacgccccactcagacaagtcctccgaggacgagattgaggaggaa
aaggaggtggtcccggtaaagctgccacccagaaggggtcgaacggagcgcgtggtggtg
aaggaggagcctgagccagaggaggagcctgagccagaggaggagaaggagcccaaagaa
agggagatgaagaaagaggttaaaaaggagaagaaagaagagagccgcgaggtgaaagag
aaggacctgaaagagaagaaggaaaccaagcccgtggatccagtacatgaacaggaagag
gtcacaggggagaagccgagcgaggtgaagactgaggtacgagagaaggtgaagaaaact
tgtgacactccggtccacatcacagcagggggagagaacatctcggaggagtcggaggaa
ctggaccagaagaccttcagtgtgtgtaaggagaggatgcgaccggtcaaggcggccctg
aagcagctggaccgtccggagaagggcctgtcggaacgcgagcagctggagcacacgcgc
cagtgcctcatcaagatcggagaccacatcaccgagtgtctgaaggagtactccaacccc
gagcagatcaaacagtggagaaaaaacctgtggatatttgtttcaaaatttacagaattt
gatgcaagaaaattgcataaactgtataagcacgcaatcaagaaaagacaagagaacgct
caggcagcagatgggatcactagcactgtaaatacccatggctttaaacatgcagacatc
gagaggctgaaggacaactctcaccacgacgacagcagcagggacagctacagctctgaa
aggcatcactcggcgtcgcgctaccatgaggaccgcgacagccgggacaggcacacctcc
gacccctacagcaggatgtcggggagcgggggggactccaggaagagaccctactcggcc
ttcagcaacggcaaagaccacagagaccactacaggtcagaccggcaggacagcagatac
tacagcgacagtaagcacaggaaggtggacgagcaccggtcaggccgagacggacggatg
gacagcaaggagcgctcccactcagaccaccgctcccattccgaacaccactcgggctcc
gactactcatcgggccaccacaagtcgtcatcgcgaggtgactcctaccgctaccacgca
gactggcagatggaccaacgggcatcggccagcggtccccgttcgccgcgtgaccaacgc
tcgccacgcgaccagcgctcgccctacgatggacgctcgccgttaggccaccggtcgccc
ttcgagtactcgtcagaccacaagagcacgccagagcagatctggagcagccgcaagaca
taa
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