Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408315
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Entry
139408315 CDS
T10872
Name
(RefSeq) m7GpppN-mRNA hydrolase
KO
K12613
mRNA-decapping enzyme subunit 2 [EC:
3.6.1.62
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
Enzymes [BR:
ocla01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.62 5'-(N7-methylguanosine 5'-triphospho)-[mRNA] hydrolase
139408315
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139408315
mRNA degradation factors
5'-3' decay
Decapping complex
139408315
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Gene cluster
GFIT
Motif
Pfam:
DCP2
NUDIX
NUDIX_4
Motif
Other DBs
NCBI-GeneID:
139408315
NCBI-ProteinID:
XP_071008142
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All DBs
Position
5:9803157..9821208
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AA seq
402 aa
AA seq
DB search
METKRGEIPNGVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFCMQNAPGLPQC
GIRDFAKAVFNHCPFLLPNGEDVQKVLEQWKEYKMGVPTYGAIILDESLDNALLVQGYLA
KSGWGFPKGKVNEDEAPHVCAVREVMEETGFDIKDRICKDTYIEQKITDQLARLYIIPGV
PKETKFNPKTRKEIRNIEWFPIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFVRPLREWIA
KRKGESTDSDEDFASNGSTPCKPLDKARSKHRRAQMLPEASPGEGWGKQKQPKPLGQLSQ
YEVSELLKAKNLNVKGNGKKHQDSPNLKKRANGVGNQQKEEKRLQPRRLQDNFDTDSALP
SDTCSSTNGQQVVCNSNCEHLSSRSFLNFKFDREAIMKCFDS
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggagacaaaaagaggggagattcccaacggcgtattggacgacctctgcagtcgattc
atcctccacatccctagtgaagagagagacaatgctatccgcgtgtgcttccagatcgag
cttgcccattggttctacctggacttctgcatgcagaatgcaccaggattacctcagtgc
gggataagggactttgccaaggctgtttttaatcattgtccattcttgctgcccaatggg
gaggatgtacagaaggttctagaacagtggaaggaatataagatgggtgttccaacctat
ggtgccattattctagatgagtcgcttgacaatgcattgctggttcagggctatttggcc
aagtcagggtggggctttccaaagggaaaagtcaatgaagatgaggctccccatgtttgt
gctgtacgagaggttatggaggagacgggtttcgatatcaaagatcgcatctgcaaagat
acgtacatcgagcagaaaatcactgatcagttggcccgattgtacataatacctggggta
cccaaggagacgaagttcaaccccaaaacaaggaaggagataaggaacatcgagtggttc
ccgattgagaaactaccatgtcacagaaatgacatgactcccaagtctaaacttggactc
gcccccaacaagtttttcatggccattccttttgtcagaccactccgagaatggattgcc
aagcgtaaaggagagtctacagacagtgatgaggattttgcatccaatggcagcactcca
tgcaaacctctggacaaagcacgctccaagcatcgacgggcccagatgttgcctgaggca
tctccaggagaggggtgggggaagcagaagcaacccaagcctctgggacagctgagccaa
tacgaggtctctgaactcttgaaagccaagaacctcaatgtgaaaggcaatgggaagaag
caccaggattctcccaacctgaagaaaagagccaatggagtcggcaaccagcagaaagag
gagaagagacttcagcccaggagactacaggacaacttcgacacagattcagcactgcca
tctgacacgtgcagctccaccaatgggcagcaggtggtctgcaacagcaactgtgaacac
ctctcctccaggtccttcctcaacttcaagttcgacagggaggccatcatgaaatgcttt
gactcctga
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