Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408408
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Entry
139408408 CDS
T10872
Name
(RefSeq) nucleoporin NUP188
KO
K14311
nuclear pore complex protein Nup188
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139408408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139408408
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139408408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Nup192
Motif
Other DBs
NCBI-GeneID:
139408408
NCBI-ProteinID:
XP_071008358
LinkDB
All DBs
Position
5:complement(14750618..14771542)
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AA seq
1735 aa
AA seq
DB search
MADSEMYVRSSRELWTILLGRSALREPAQIEEELDRNWERLLQGLCYYKTPSSSAAEKLK
ADKDVAQPLKDFGLRISKLLGLDQQQSVQILQCYLQEDYRGTRNTLKDVLQDERPSQALL
LKIADYYYEERVCHLRCVLLLLTYFQDERHPYRVEYSNCVNKLEKDLVNNYQKQFETLFK
AESPTWETHGNLMTERQVSRWFLQCLREQSLLLEILFLYYAYFEMGPGDLLSFTKMFKEQ
GFGLRQTNRHLVDKSMDALVDRIGYFSCLILVEGMDIDFLHKCALEDRTEQHQFSNTPAI
SKEMDQMLLTFGDIPHHGPVLLAWVLLRHTLSPDESSPVIRRIGNTSLQLGVFQYLTTML
QGLGGTGNNCTASTARMCIYGLLSFVITSFEEETLGSQQHLINAACEVLSAPSLAELFWE
TKPTMGLGMILDSAMGMFPHKTGMLLQLLTALLSDKSTAKKVYIFLDKMSFYTEVYKTKP
NDVISRDDETLWRRQAPKLLYPLGLGQTNLRMPQGVLGQVAVGEQGYVVRWDYSYSAWIL
FTCEIEMLLHVVSTADVILHCERVKPILDLVHKMISTDWTVSDCLLPLTSRIYMLLQRLT
SVINPPVDVIASCANCLIVLAARMPGKVWSSLHHTGFLPFASSPLTNMAQSISAEGMKAG
NYGNLLVLIEQPRGEYAVTIAFLRLVTTLVKGQLGSTQDKGLIPCVLLVLKEMLPTYHKW
RYNTHGVRERIGCLILELVHAILNLSPEGEASGSTPTLQSLCIYSLANTEAGQAVVNIMG
VGVDTIDVVLAAQPSSGGSEGPGQILIQTVKLAFSVTNNVIRLKPPSSAVSPLEQALTQH
GGHGSNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGGDAAAIRDAFLTR
LQSRTEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGAEGSKEFLLGEWSCLQVVLD
LIDSRQQGKYWCPPLLHRAALAFLHALWQDRRDSAISVLRTKERFWENLTTPLFGTLPAP
SDITEPCVLETCAFVMKIIGLEIYYVVSGSLERSLKDALQKFSSGRRYEYWSQYVKSLVV
HVAETEEEEGVHSFSETQMVISAWRMLLILSTSHSDVMQLKEDSARLKLFMDVLDGTKAA
LLVPMSVPCLRLGSMMATLLLILLKQWRSVVATAPDVLAPLSLILESVLQGDQQLMESTK
AKVFSALISALQIQGLNGGEISQLPQLLLCVCETVQDEALALIDSTRHAAQVRDIPDDKD
SMETDAVRSFQKDQRDGVCVLALHLAKELCRADEDGEHWVLVMRKIPALHSILSALELSL
RSKQNLYFTEAALHLLLTLARTPQGAAAVAGAGVIQSICLPLLSVYEVPSNGASQGFSRK
SQDAPCWPGVYRLSMSLMEILLKTLRYNFINEALDFVGVHQERILQCLNAVRTVQSLVCL
DEADHTVGFLLQLSSFCKEWQFHLPHLLRDVQINLCYLCQTCTYLLHSRNMLHHYLQAKN
GEALPSGPRAQRDPQTPSKAAAEGGGGEREEAEQKALLAVQCSLLKILSKTLATLQHFTP
DCCQIILDQCMDLAEYRTLFVLSFTTSAFDADVAPSFGTLLATINVALSMLGEVEKKEPA
SLSVASLASSEETQALKSLLMFTMENCFYVLISQAVRCLKDPSIAPRDKQRLKQELGSEL
STLLSSLSRHFRRGAPSSPASSLLPSPQPPGAKASHEGQEPFIQLVQAFVRHIQR
NT seq
5208 nt
NT seq
+upstream
nt +downstream
nt
atggcggactcggagatgtatgtgaggagcagccgagagttatggactatcttactgggg
agatctgcattgagggaaccggctcaaatagaggaagaactagatcgaaattgggaacga
ttacttcaagggctgtgttactacaaaacacccagttcatcagcggccgaaaaactgaaa
gcggacaaagatgtggcccaaccattgaaggattttggtctgaggatcagtaaactgttg
ggtctggatcaacagcagagtgtacagattttacaatgttaccttcaagaagattacaga
gggacccgcaacacactgaaggatgttctgcaggatgagagaccgagccaagccctactt
ctgaagatcgctgactattactatgaggagcgtgtgtgtcatctgcgatgcgtcctcctc
ctgctgacgtactttcaggatgagagacacccttacagggtggagtactccaactgtgtg
aacaagctggagaaggacctggtcaataactaccagaagcagtttgagaccctgttcaaa
gctgaatccccgacatgggagacgcatggcaacctcatgacggagaggcaggtgtcccgc
tggttcctgcagtgtctgagggagcagtccctgctgctggagatcctgttcctgtactat
gcctactttgagatgggtcccggagacctgctcagcttcaccaagatgttcaaggagcag
ggcttcggccttcgccagaccaacagacacctggtagacaagagcatggatgccctggtt
gatcgcatcgggtacttcagctgtctgatcctggtggaaggcatggacatagacttcctc
cacaagtgtgccctagaggaccgcacggagcagcaccagttctccaacacccctgccatc
agcaaggagatggaccagatgctgctgacgtttggtgacatccctcaccacgggccagtg
ctgctggcctgggtcctgctgagacacaccctgagcccagatgagtccagccctgtcatc
agacgcatcgggaacacctccctacaactgggggtgtttcagtacctcaccaccatgctg
cagggtctgggaggcactgggaataattgcacagccagtacagccaggatgtgtatctac
ggcctcctctcctttgtcattacctcctttgaagaggagacgctgggcagccaacagcat
ctaataaatgcagcgtgtgaagtcctctctgcgcccagtctggctgagctcttctgggaa
acgaagcccactatgggattgggaatgatcctggatagcgcaatgggaatgttcccacac
aagactggtatgctgttgcagctccttactgcgctcctgtcagataagtccactgcaaag
aaggtgtacattttcctggacaagatgtcgttctacaccgaggtctacaaaacaaagccc
aatgacgtcatctctagagacgacgagacactgtggaggagacaagcaccaaaactcctc
taccctctcggcctgggccagactaacctgcggatgcctcagggtgtgctcggtcaggtg
gctgtgggggagcagggctacgtggtgcgctgggactactcctacagtgcctggatcctg
ttcacctgtgagatagagatgctgctccacgttgtctctactgcagatgtgatcttgcac
tgtgagcgtgtgaagcccatcctggacctggtccataagatgatcagcacagactggacc
gtgtctgactgtctgctgcccctcacctcacgcatctacatgttactgcagaggttgacg
tcagtcatcaaccctccagtggatgtgatagcgtcctgtgcgaactgcctcatcgtcctg
gctgctaggatgcctggcaaggtttggtccagcttgcaccacactggttttctgcccttc
gcctcctcccctctgaccaatatggcacagtccatcagtgctgaggggatgaaggcgggt
aactacggcaacttgctggtcctgattgagcagcccagaggggagtacgctgtgaccatc
gccttcctgcgcctcgtcaccaccctggtcaagggccagctgggcagcacccaggacaag
ggcctcatcccctgtgtgctgctggtgctgaaggagatgctgcccacctaccacaagtgg
cgctacaacacccatggagtcagagagaggattggttgtctgatcctggagttggtccat
gccatcctgaacctcagtccagagggagaggctagtggcagcacgccaaccctccagtct
ctgtgtatctacagtctggctaacaccgaggctggccaggcggtggttaatatcatgggg
gtgggagtggacaccatagacgtggtcctggctgctcagcccagcagtggtggctcggag
ggcccaggtcagatccttatccagacggtcaagctggccttctccgtcaccaacaacgtg
atccgcctcaagccaccgtcgagcgccgtttcgcccctggagcaggcgctgacgcagcac
ggtggccacggcagcaacctaattgccgtgcttgccaagtacatctaccacaaacacgac
ccggccctaccgcgcctcgccatccagctgctcaagaggctcgccacggtggctcccatg
tcggtgtacgcctgcctgggcggtgacgcggctgccatcagggatgcctttctgactcgg
ctacagagcaggacggaggacatgaggatcaaggtgatgatcctggagttcctcaccgtg
gccgtggagacccagccgggcctcatcgagctcttcctcaacctggaggtcaaggatggc
gcagaggggtcaaaggagtttctgctgggtgagtggagctgtctgcaggttgtgttggac
ctgattgactccaggcagcaggggaagtattggtgtccccccctgctgcaccgcgccgcc
ctggccttcctccacgccctgtggcaggaccgacgggatagcgcaatctctgtcctacgc
accaaagagaggttttgggaaaacctgaccacgcctttgtttggaacccttcccgccccc
tcagacatcactgagccttgtgttctggagacctgtgccttcgtcatgaaaatcatcggc
cttgagatctactatgtagtcagtggctctctggagcgctctctgaaggatgcactgcag
aagttctccagcgggcggcgctacgagtactggtcccagtatgttaagtccctggtggtc
cacgtggcagagacggaggaggaagagggcgtgcactcgttctccgagacccagatggtc
atctcagcctggcggatgctgctcatcctctccaccagtcattcggatgtgatgcagtta
aaggaggactctgccagacttaagctcttcatggacgtgctggatgggaccaaagctgct
ttgctggtgcccatgtctgtgccctgtctacgtctgggatccatgatggctactcttctg
ctgatcctgcttaaacagtggagaagtgtggtggccacggcccctgacgtactggccccc
ctttctctgatcctggagagtgtcctgcagggcgaccagcagctgatggagagtaccaag
gccaaggtgttctctgccctcatctctgcacttcagatacagggactcaacggtggggag
atctcccaactgccccagctgctgctctgtgtgtgtgagacggtgcaggacgaggcgctg
gcactgattgacagcactcgtcacgcggctcaggtgagggacatcccggatgacaaagac
agcatggagactgacgccgtccgcagcttccagaaggaccagagagacggggtgtgtgtg
ctggccttacacctggccaaggagctgtgtcgtgccgacgaggacggggaacactgggtt
ctagtgatgaggaagattcctgctctccactctattctcagcgctctagaactcagcctg
cgctccaaacagaacctctactttaccgaggctgccctgcacctgctgctcacgctagcc
cgcacaccacagggtgcagcagcagtagccggggccggcgtcatccagagtatctgtctc
cctctgctcagtgtctacgaagtgccctctaacggagcctcacagggtttctcccgtaag
tcccaggatgctccctgctggccgggggtgtaccgcctctctatgtccctcatggagatc
ttgctcaagacgctgcgctacaacttcatcaacgaggccctcgactttgtcggagtgcac
caggaacgcatactgcagtgcctgaatgcggtgcggacggtccagagtctggtgtgtctg
gatgaggctgaccacacagtgggcttcctgctgcagctgtccagcttctgtaaggagtgg
cagttccatctgccccatctgctccgagatgtacagatcaatctgtgttacctgtgccag
acgtgcacctacctcctccacagcaggaacatgcttcatcactacctccaggctaagaat
ggggaggcgctgccctccggcccccgtgcccagagagatcctcagacgccctccaaagct
gcagccgaaggagggggcggggagagggaggaggcggagcagaaggccctgctggcagtg
caatgcagcctgctgaagatcctcagtaagactctggccacgctgcagcacttcacccct
gactgctgtcagataatactggaccagtgtatggacctggcagagtacaggaccttgttt
gtgctgagcttcaccacctcggcctttgacgctgacgtggcgccctcttttggaacccta
ctggcaaccatcaacgtggccctaagcatgctgggagaggtagagaagaaggagccagcc
tctctgagtgtagcctccctggcctcgtcagaggaaacccaagccctcaagtctctgctg
atgttcaccatggagaactgtttctacgtgctcatctcccaggccgtccgctgtctgaag
gaccccagcatcgcccccagagacaaacagagactcaaacaggagcttggctctgaactg
agcaccctcctctccagcctgtcccgtcacttccgccgtggcgccccctcgtccccggcc
agcagcctgctgccatctccccagcccccaggcgctaaggccagccacgagggtcaggag
cctttcatccagctggtgcaggccttcgtacgccacatacagaggtag
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