Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408461
Help
Entry
139408461 CDS
T10872
Name
(RefSeq) transitional endoplasmic reticulum ATPase-like
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04137
Mitophagy - animal
ocla04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
139408461
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
139408461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139408461
03009 Ribosome biogenesis [BR:
ocla03009
]
139408461
04131 Membrane trafficking [BR:
ocla04131
]
139408461
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139408461
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
139408461
Ribosome biogenesis [BR:
ocla03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
139408461
Membrane trafficking [BR:
ocla04131
]
SNARE
SNARE associated proteins
Others
139408461
Autophagy
Aggrephagy
Other aggrephagy associated proteins
139408461
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
139408461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_33
AAA_5
AAA_2
TIP49
AAA_22
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
nSTAND3
AAA_28
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
NB-ARC
TsaE
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
139408461
NCBI-ProteinID:
XP_071008486
LinkDB
All DBs
Position
5:16756277..16776556
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGESKNDDLSTAILKQKTRPNRLVVDESLNEDNSVVSLSQAKMDELQLFRGDTVLMK
GKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPNPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDAALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLSDDVDLEQVANQTHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPNISWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNAGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRINILGAN
LRKSPIAKDVDLDFLAKMTNGFSGADLTEICQRACKMAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPTNSAPG
AGPSQGSAGGSGGTVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaggaggagaatcgaaaaatgatgatctatccacagcgattttaaagcaaaag
accaggcctaaccggttggttgtggatgaatctctcaatgaggacaacagtgtggtctcg
ctgtctcaggccaagatggacgagttgcagctgttcaggggagacacagtgctgatgaaa
ggaaagaagagacgggagacggtctgcatcgtgctctctgatgacacctgctccgacgag
aaggtccgcatgaacagagtggtccgcaacaacctaagagtccgcctgggagatgttatc
agtattcagccatgcccagacgtgaagtacgggaagcggatccacgttctgcccattgat
gacactgtggaggggatcacagggaacctgtttgaggtctacctcaagccctacttcctg
gaggcctacaggcccatcaggaaaggggacatcttcctggtgaggggaggcatgcgagct
gtggagttcaaggtagtggagacagaccccaacccctactgcattgtggccccagacaca
gtcatccactgtgagggggagcccatcaaacgagaggatgaagaggagtctctgaatgag
gttggctatgatgacattggtggtgtgaggaagcagctggcccagattaaggagatggtg
gagctgcccctgagacacccagcactgttcaaggccatcggcgtcaagcctccaagggga
atcctgctgtacggaccccctggaacaggaaagactctgatcgcccgtgctgtggcgaat
gagactggagccttctttttccttatcaatgggcctgagatcatgagtaaactggccgga
gagtctgagagtaacctgaggaaggccttcgaggaggctgagaagaatgcccctgccatc
atcttcattgatgagctggacgccattgcaccaaaaagagaaaagacacacggtgaggtg
gagaggcgtatcgtgtcccagctcctcacactcatggacggccttaagcagcgtgctcac
gtcatcgtcatggcagccaccaacagacccaacagcattgacgccgccctcaggcgattt
gggcgttttgacagggaggtggacattgggattcctgacgcaacaggcagactggagatc
cttcagatccataccaagaacatgaaactgtccgacgatgtcgacctcgagcaggttgcc
aatcagactcacggccacgtgggtgctgacctggctgctctgtgctctgaagccgccctg
caggccatcaggaagaagatggatctcatcgaccttgaggacgagaccatcgacgcagag
gtcatgaactcccttgccgtcaccatggacgacttcagatgggctctgagccagagcaac
ccatctgccctgagagagactgtggtggaggtgcccaacatcagctgggaggacatcggt
ggtctggaggatgtcaagagggaactccaggagcttgtacagtacccagtggagcaccca
gacaagttcttgaagttcggcatgaccccatccaagggcgtgctgttctacggaccccca
ggttgcggtaagaccctgctggccaaggccatcgccaacgagtgccaggccaacttcatc
tccatcaaagggcccgagttgctcaccatgtggttcggcgagtctgaggccaatgtccga
gagatctttgacaaggctcgccaggccgccccctgcgtgctcttctttgacgagctggac
tccatcgccaaggcgcgtggcggcaacgcgggtgatggtggtggagcagctgaccgtgtc
atcaaccagatcctgacggagatggacggcatgtccagcaagaagaacgtcttcatcatc
ggcgccaccaacaggcctgatatcatcgacccggccatcctgaggcccggcagactggac
cagctcatctacatccccctgccagatgagaagtcccgcatcaacatcctcggagccaac
ctcaggaagtcacccatcgccaaggatgtggacctggatttcttggccaagatgaccaat
ggtttctctggagctgacctgacagagatctgccagagggcctgtaagatggccatcagg
gagtccatcgagaacgagatcaggagggaaagggagaggcagaccaacccctcagccatg
gaggtggaggaggacgaccctgtcccagagatccgtaaggaccactttgaggaggccatg
cgtttcgcccgccgctccgtcagtgacaacgacatccgcaaatacgagatgttcgcccag
acgttacagcagagcagaggcttcggaagtttccggttccccactaactctgcgccaggg
gccgggcccagccagggctctgctggtggcagcggtggcacagtcttcaacgaggacaac
gacgacgacctctatggttaa
DBGET
integrated database retrieval system
