Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408522
Help
Entry
139408522 CDS
T10872
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1-like isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139408522
03041 Spliceosome [BR:
ocla03041
]
139408522
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
139408522
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
139408522
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_Nup35
Calcipressin
Motif
Other DBs
NCBI-GeneID:
139408522
NCBI-ProteinID:
XP_071008605
LinkDB
All DBs
Position
5:complement(21964037..21974292)
Genome browser
AA seq
390 aa
AA seq
DB search
MMDDETPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDPYCFVEFYEHRHA
ASSLAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIKAAFAPFG
RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK
ATYETNTKHLSFEEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFTPFGQIMEIRVFPDKG
YSFVRFNSHEGAAHAIVSVNGTSIDGHVVKCYWGKETTDMVSPMQQVQMPQVRPQQNKIG
FAAQPYGQYAQWYGNAQQIGQYVPNGWQVPTYGVYGQAWNQQGFNHLQAGAGWTGVGAVS
NGGVVEPGQGVNGTVLANQSGMGTAGYHTH
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgatggacgacgaaacacccaagaccctgtatgttgggaacctgtcccgggatgtgact
gaagccctcatcatgcagctgtttggacagatcggcccctgcaagagctgtaaaatgata
gtagacacggcaggtaatgacccatactgctttgtggagttctacgaacacaggcacgct
gcctcgtcactcgcagccatgaatggtcgtaaaataatgggtaaggaggtcaaggtgaac
tgggccacaacccctagcagccagaagaaagacacaagcaatcacttccatgttttcgtt
ggagacctcagtcctgaaatcaccacggatgacatcaaggctgctttcgccccctttggg
aggatatctgatgctcgggtggtgaaagacatggctactggcaaatctaaaggctatggc
tttgtgtccttcttcaacaaatgggatgcagagaatgccatccaacagatgggaggtcag
tggttgggaggacggcagatcaggactaactgggccaccaggaagccccctgcgcccaaa
gccacctacgagacaaacaccaaacacctgtcgtttgaagaggttgtgaaccagtccagt
cccagcaactgtaccgtctactgtggaggtgtcacaacaggcctcacagagcaactgatg
aggcagaccttcacccccttcggtcagatcatggagatccgagttttcccagacaaaggc
tactcatttgtgaggttcaactcccacgagggagcggcccacgccatagtgtcagtgaac
gggacgtccatagatggtcacgtggtgaagtgttactgggggaaagaaaccacagacatg
gtcagccccatgcagcaggtacagatgcctcaggtaagaccacagcagaacaaaataggt
tttgcagcgcagccctacggccagtatgcccaatggtacggtaacgcccagcagattggc
caatacgtcccaaacgggtggcaggtgcccacctacggagtctatggacaggcctggaac
cagcagggattcaaccatttacaggcgggtgcagggtggacaggcgtgggagccgtcagt
aatggtggtgtggtggagcctggacagggagtcaatgggactgtgctggccaaccagtcc
ggcatgggcaccgctggctaccacacccactga
DBGET
integrated database retrieval system
