Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408526
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Entry
139408526 CDS
T10872
Name
(RefSeq) AP-3 complex subunit beta-1-like isoform X1
KO
K12397
AP-3 complex subunit beta
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
139408526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139408526
Membrane trafficking [BR:
ocla04131
]
Endosome - Lysosome transport
Others
AP-3 complex
139408526
Endosome - Golgi transport
139408526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
AP3B1_C
AP3B1_C_2
Cnd1
HEAT_2
INTS1_R4
Motif
Other DBs
NCBI-GeneID:
139408526
NCBI-ProteinID:
XP_071008616
LinkDB
All DBs
Position
5:22304679..22394221
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AA seq
1124 aa
AA seq
DB search
MNGHRGFSVLRSEAAGAVRTALVSAENLQLTLKTELSQEEQHLTPHTHTNGGPDETHTKG
YCTEVNEDLKEMLESNKESLKLEAMKRVVGLIAKGKNASELFPAVVKNVASKNIELKKLV
YVYLVRYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPIIVPIMMLAIKEA
ASDMSPYVRKTSAHAIQKLYSLDQDQKELLIEVIEKLLKDKSTLVAGSVVMAFEEVCPDR
IDLIHKNYRKLCNLLVDVEEWGQVVIISMLTRYARTQFTNPWKEEGVFDEHNERAFYESD
EEKTRDETEAKPYMMDPDHRLLLRNTKPLLQSRNTAVVMSVAQLYWHLAPKNEVSIVTKS
LVRLLRSHREVQYIVLQNIATMSIQRKGMFEPYMKSFYVRSTDATHIKSLKLEILTSLAN
EANISTILREFQTYVKSQDKQFAAGTIQAIGRCATNISEVTDTCLNGLVLLLSNRDETVV
AESVVVIRKLLQIQPTQHSDIIKHMAQLFDNITVPMARASILWLMGEYCERVPKIAPDVL
RKMAKSFTSEEDIVKLQTVNLAAKLYLTNSKQTKLLTQYILNLGKYDQNYDIRDRTRFIR
QLIVPNDKNGALSKYAHRILLAPKPAPVLESAYKDRDRYQLGTLSHTINTKASGYLELSD
WPAVAPDQSVRNVEVIEPVKEWAPSLGKTGKSKPAKSSDDKFYSDSGEEEEEKGSGSSSS
EDGSSSSEGSDAESHVQKNSSQSSEESDKSSSQSEKSSSESDSEKKERKTKTPLQKKTVK
PTAKDSDSDENGNIAKEVNSSSAEESSSDSDSESDSDTHTDSDSGTEHKKETKSKAKPKV
EVKSTKEVSLLDLGDFTPAPVTQHKSSVLSPSLLGDLEGLSLSNVSSTIQVSGPAFVPEK
SHGLLHRMTGKGLSAQYQFPRQPCLYQPTMVSVQISLTNTTDHPLEQIHIGDRSPTGLNM
HCFNTIECLEPEASVTVFMGIDFNDSTQAANFQLCTKEDHFSVSIQPAIGELLLPITMTE
LDFRKEQGKLLGMNESSAIITMAAENMTSQPISRPVATVANLGVVPSSQDNVHRFAGKAA
SSGAVVLVTVELRESSTALITINTEKSVMGSMLLRDLKLALAQA
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgaatggtcaccgaggtttctctgtgctgcgttctgaggcagcaggggctgtgaggaca
gctctggtgtctgctgagaacctccagctcaccttaaagactgaactcagccaggaggag
cagcacctcacaccccacacacacaccaatggaggccccgatgagacacacaccaaaggg
tactgtacagaagtgaatgaagaccttaaagagatgcttgagagcaacaaggagtcgctt
aaactggaggccatgaagagggttgttgggctgatcgcaaaggggaagaatgcctctgag
ctgttcccagcagtggtgaagaacgtggctagtaagaatatagagctgaagaagttggtg
tatgtgtacctggtgaggtatgcagaggagcagcaggacctggctctactgtccatcagc
acctttcagagggccctcaaggaccctaaccagctgatcagagccagtgctctcagggtt
ctgtccagtatcagagtcccaatcatcgttcccatcatgatgctggccatcaaggaggct
gcctccgacatgtccccttacgtcaggaaaacatccgcccacgccatccagaaactctac
agcctggaccaggatcagaaggagctcctgatagaagtcattgagaaactgctgaaggac
aaaagcacattggtagcaggcagcgttgtgatggcctttgaggaggtgtgtccggaccgt
attgacctgatccataagaactaccgtaaactctgtaacctgctagtggacgtggaggag
tggggtcaggtggtcatcatctccatgttgacacgctacgccaggacacagttcaccaac
ccctggaaagaggaaggtgtgtttgatgagcacaatgagagggcgttctatgagtctgat
gaggaaaagactagagatgagacggaggccaagccctacatgatggaccctgaccacaga
ctgctgctcaggaacaccaagcctctactacagagcagaaacactgccgtggtgatgtct
gtagcccagctgtactggcacctggctcctaaaaacgaggtcagcatcgtcaccaaatct
ctggtcagactgctcagaagccacagagaggtgcaatacattgtgttacagaacattgcc
accatgtccatccagagaaagggcatgtttgaaccttacatgaagagtttttatgtgaga
tctacagatgccactcacatcaaatcactcaagctggagatcttgaccagcctggccaac
gaagccaacatctccactatccttagagagttccagacctatgtgaagagccaggacaag
cagtttgctgccggtaccatccaggccataggcaggtgtgccaccaacatctctgaggtc
acagacacctgcctcaatggactggtgctgctgctctccaacagagacgagacggtggtc
gcggagagtgtggtggtgatcaggaagctgctccagatccagcccacccagcacagtgat
atcatcaaacacatggcccaactctttgacaacatcactgtgccgatggcgcgggccagc
atcctgtggctaatgggagagtattgtgagagggtccctaagatcgcccctgacgtcctc
cgcaagatggccaagagcttcacctccgaggaggacatcgttaagctccagactgtcaac
ctggctgccaaactctacctcaccaactccaaacagactaagctgttgacccagtacatt
ctgaacctggggaaatatgaccagaactatgacatcagagaccgcacgcgattcatccgc
cagctcattgtgcccaatgacaagaacggagcgctcagcaagtacgcccaccgcattctg
ctggcgcccaaaccagcacctgtcctcgagtctgcctacaaagaccgcgatcgttaccag
ttgggaaccctgtcccacaccatcaacaccaaagccagtggctacctggagctctctgat
tggcccgccgtggctcctgaccaatcagtgaggaatgtggaggtaattgagccggtgaag
gagtgggctccatctctagggaagactgggaaatccaagcctgccaagtcatcagatgac
aagttctactctgactctggagaggaggaggaggagaagggatcagggagcagtagcagt
gaggatggtagtagtagtagtgaaggcagcgatgcagagagccatgtccagaagaacagc
agtcagagcagtgaggagtcagacaagtcctccagccaatcagagaagagttccagtgaa
tctgactctgaaaagaaggagaggaaaactaagaccccactacagaagaagacagtcaaa
ccaacagccaaagacagtgattcggatgagaatgggaacattgctaaagaagtcaacagt
tcgtctgcagaagagagctcctctgattctgattcagaatcagactctgacacccacaca
gactctgactcaggcaccgaacacaagaaggagaccaagtctaaagccaaacccaaggtg
gaggtgaagtcaacgaaggaggtgtctctgttggatctgggtgacttcactcctgcacca
gtgacccagcacaagtcttctgtcctctctcctagcctgctaggagacctggagggcctg
tcactctccaatgtctcctccaccatccaggtgagcggtccagcgtttgtcccagagaag
agccatggcctgctgcaccgtatgacaggtaaaggtctgtcagcccagtaccagttcccc
agacagccctgtctctaccagcccaccatggtctcagtccagatcagcctgaccaacacc
acagaccaccctctggaacagatccacattggagacaggagccccacaggactcaacatg
cactgcttcaatactatagagtgtctggagccagaggcctcagtgactgttttcatgggc
atcgacttcaacgactcaacacaagcagccaacttccagctgtgtacgaaggaggaccat
ttcagtgtgtccatccagcctgccataggggaactcctcctgcccatcaccatgaccgaa
ctggacttccgcaaggagcaaggtaaacttctgggcatgaacgagagctcggcaatcatc
accatggcagcagagaacatgaccagccaaccaatcagcagaccagtggcaaccgtggcc
aacctgggagtggttccatccagtcaagacaacgtccacaggtttgctggtaaggcggcc
agtagtggagctgtggtgctggtgacggtggagctgagggagtcgtctacagccctgatc
accatcaacacagaaaagagtgtcatgggctccatgctgctccgagaccttaaactggcc
ctggcccaggcctag
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