Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408658
Help
Entry
139408658 CDS
T10872
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1-like isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04020
Calcium signaling pathway
ocla04080
Neuroactive ligand-receptor interaction
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
139408658
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139408658
04082 Neuroactive ligand signaling
139408658
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139408658
Ion channels [BR:
ocla04040
]
Ligand-gated channels
Glutamate (ionotropic)
139408658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Motif
Other DBs
NCBI-GeneID:
139408658
NCBI-ProteinID:
XP_071008929
LinkDB
All DBs
Position
5:complement(32599779..32635277)
Genome browser
AA seq
949 aa
AA seq
DB search
MRLFLLAVFLSCSCARGGCEPKIVNIGAVLSQKRYEQVFKDAVTQANQIYGRDKFKLTAI
SVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDMMREFRWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKAEKVLQFSQETNLTALLLEAKELEARVIILSA
SEEDAAAVYKAARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHIND
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKYAHYSILNYQKSRLIQVGIYNGTQVVMNNQRKIIWPGGETEKPRGFQMSTRLKIVT
IHQEPFVYVKPTEQDGTCKEEKTLNGVADIKKVICTGPNETIPGRPIVPQCCYGFCIDLL
IKLAGTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTINNER
AQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRF
SPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMII
VASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMY
RHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMR
KDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGG
IAAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQPSSSLETQDDRKSGRAEPPD
PKKKASFRSISTSLASSIKRRRSSKDTQYPPTDITGQLNLSDPSVSTVV
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtttctgctggcggtgttcctctcgtgctcctgtgcgcggggcggctgcgaa
ccgaagatagtgaacatcggagcagtcttgagtcagaagaggtacgagcaagtctttaag
gatgcggtgacccaggcgaatcagatctacgggagagataaattcaagttgaccgccatc
tccgtaacgcacaaacccaacgctatccagatggctctctccgtctgcgaggacctcatc
tctaaccaggtgtatgccatcctggtgagtcatcctccccagtccaatgaccacctcacc
cccacgcctgtgtcatacaccgcaggcttctaccgcatccctgtggtgggcctcaccacg
cgcatgtccatctactccgacaagagtatccacttgtcctttctgcggactgtccccccg
tactcccaccaggctcacgtgtggttcgacatgatgcgagagtttcgatggaaccacatc
atcctgattgtcagcgatgaccacgaggggcgggccgcgcagaagagactggagacccta
ctggaggagagggaaacaaagaataaaaaaaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacctaaggcagagaaagtcctccagttcagccaggagactaac
ttaactgctctgcttctggaggccaaagagctggaggctcgtgtcatcatcctctccgcc
agtgaagaggacgctgctgcagtttacaaggctgcccgtttcctcaacatgacgggctcg
ggttacgtgtggctggtgggagagcgggagatgtcgggtaaagccctgagtgaggcacca
gatggtctcatcggcctccagctcatcaacggcaagaacgagtcggcccacatcaacgac
gcagtggcagtggtggctcagtccatccaggagctctttgagaaggagaacatcacggag
ccgcccagaggatgtgtgggaaacaccaacatctggaagaccgggcccctcttcaaaagg
gttctgatgtcatcaaagtacccagagggcctcactggacgtgtggagttcaatgacgat
ggcgacaggaagtacgctcactacagcattctcaactaccagaagagtcgactcattcaa
gtcgggatttacaatggaacacaggtggtgatgaataatcagaggaagatcatctggccg
gggggagagacagagaaaccgcggggctttcagatgtccacaagactaaagatagtgacc
atacaccaggagccctttgtgtatgtgaaacccactgagcaggatggaacctgcaaggag
gaaaaaaccttaaatggagtggcagatattaaaaaggtgatctgcactggaccaaatgag
accatcccaggacgtccaattgtacctcaatgttgttatggattctgtatcgatctactt
atcaagttggccggaaccatgaactttacctatgaggtgcacctggtggctgatgggaaa
tttggaacacaggagcgggtgaacaacagcaacaagaaagagtggaatggcatgatggga
gagctcctggggggtctggcagatatgattgttgccccgctgacgataaacaacgaacga
gcccagtacatcgaattctccaaaccttttaagtaccaaggcctaaccatcctcgttaaa
aaggaaatccctcgcagtacactggactcgttcatgcagccgtttcagagcacactgtgg
ctgctggtgggtctttcggtgcatgtggtggcggtgatgctttacctactagaccggttc
agcccgtttgggaggtttaaagtaaacagtgaagaagaagaagaagatgccctcaccttg
tcgtcagccatgtggttctcctggggagtgttgcttaactccggtattggggaaggcgcg
ccgcgcagcttctcagcgagaatcttgggcatggtgtgggctggctttgccatgatcata
gtggcatcgtatactgccaacctggctgccttcctggtgctggaccggcctgaggagcgc
atcaccggcatcaacgacccgaggctgaggaacccatcagacaagttcatctacgccact
gtgaagcagagctctgtggacatctacttccggcggcaggtggagcttagcaccatgtac
cgccacatggagaagcacaactacgagagtgccgctgaggctatccaggccgtgcgcgac
aacaagctgcatgctttcatctgggactctgcggtgctggagtttgaagcctcgcagaag
tgcgacctggtgaccacgggagagctgtttttccgttcgggctttggcataggcatgcgc
aaggacagcccctggaaacagaatgtgtccctggccattctcagttcccatgagaatgga
ttcatggaagatctagataaaacctgggtgagataccaggagtgtgactcacggagcaat
gccccagccacactcacctttgagaacatggcaggagtgttcatgctggtggctggaggc
atagcagcagggatcttcctcatctttattgagatcgcctacaagcgacacaaagacgcc
cgaaggaagcagatgcagctggcctttgcggccgtcaacgtctggaggaagaacctgcag
ccctcttcctctctagagactcaggatgataggaaaagtggtagagcagagccccccgac
cccaaaaagaaagcctcttttaggtccatcagtacctccctggcctccagcatcaagaga
cgtaggtcgtccaaagacacgcagtacccacccaccgacatcacgggccagctcaacttg
tccgacccatctgtcagcacagtggtgtga
DBGET
integrated database retrieval system
