Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408701
Help
Entry
139408701 CDS
T10872
Name
(RefSeq) GATOR1 complex protein DEPDC5 isoform X1
KO
K20404
SEA/GATOR complex protein SEA1/DEPDC5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
139408701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139408701
Membrane trafficking [BR:
ocla04131
]
Autophagy
Other autophagy associated proteins
SEACIT/GATOR1 complex
139408701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEPDC5_CTD
IML1
IML1_N
DEP
Motif
Other DBs
NCBI-GeneID:
139408701
NCBI-ProteinID:
XP_071009020
LinkDB
All DBs
Position
5:complement(35188306..35218266)
Genome browser
AA seq
1606 aa
AA seq
DB search
MKNKTYKLVVHKKGFGGSDDELVVNPKVFPQVSLGDIIEIAHPTDEYSPLLLQVKSLKED
LQKETISVDQTVAQAFKLRAYQDVVVNIVDPKDVTLDLVELTFKDQYIGRGDMWRLKKSL
VSTCAYVTQKVEFAGIRAQASELWVKGEKVTCGYISEDTRVVFRSTSAMVYIFIQMSCEM
WDFDIYGDLYFEKAVSGFLSDLFAKWKERYCSHEVTVVLFSRTFYNAKTLEEFPEILRGS
IRQDHEGRFYEDFYRVVAQTERRDEWTSLLVTIKKLFIQYPVLVRLKEAVGFPSGHNSTA
AQGNYLEAINLSFNVFDKHYINRNFDRTGQMSVVITPGVGVFEVDRLLMILTKQRMIDNG
IGVDLVCMGEQPLHAVPLFKLHNRTVPGDSRLGDDYNLPHWINHSFYTSKSQNSCSCFTP
RIKLAGRKLHAEKFKNNKEHTLGAPKDENSLPIQVDYDAHDAQVFRLPGPSRAQRSTNFR
VVREREVSGRRSWGSADVSGVLGGGVSPPVRSCGPDEQRSLASDDSLGRVSNILLIPRLP
PAQYGEVSSSLGYTSTRELLEKMMESQRDSSAPGRFTVGSAESTLHVRPGGYTPQRALIN
PFAPSRMPMKLTSNRRRWMHTFPVGPSGEAIQIHHQTRQNMAELQGSEQRDPAHTSAELL
ELAYHEATGRRTASERRQAGENGLYSSGGMEEYTHGSPASSNSTGTPVNRGSSLEDFSSG
SPDPTLLLSAPPTVPSFCCTVGVDWKSLTTPACLPLTTDYFPEWQTLQNDYTEGCYDLLP
HTDLERRDDEAPVMSAPQVFEEFICQRLMQGYQIIVQPNKRKPQPAVAPPLSSSPLYTRG
LVSRRRPEEEESLYWLSMGRTFHKVCLKDKIITVTRYLPKYPYESAQIQYTYSLCPPHSD
AHFLSCWVEFGHERLEEYKWNYLDQYICSAGSEDFSLIDSLKFWRTRFLLLPAGGARRVA
DGEGHWDVYGEGVGTVAGREGMTGTGDWALLDGFIRFLEGLNRIRRRHRSDRIIRKGPAM
KGLQVTGPLSAYPPEPVAPPQGKKGTSALSALLELEQNQKTLEEQQQQGKPSAATSESST
ATMTTTYVDSPRKDAAFILDFIRSPRSSYIYHTQVSTDPAEGGATDKGGQVGAGVVATGG
AAAQATGDTGPSLATETSGQSGTGALCLSSSSTLMEILEAIKHPTTGVQLLPEQKGLPPN
CFISAEIVHWLVNNVEGVATQGMAVDIMQKMLDEGLVTHASGDAMRTFVYGFYFYRIVAE
KDGERGPTSQLPPPVAQGWSTAALEDFALFQRKWFEVAFVLEERRTCDLPAFLLPWLPSR
PASYASRHSSFSRSFGGRSQAAALLAATVPEQKTATLDVDVNNRSDRTEWCSCYYHGNFS
LNAAFEVKLHWMAVTAAVLFEMVQGWHRKAASCGFLLVPVLEVPFALPSYLYGDPLRAQL
FIPLHIHRLLRDGSDNLFEGFEPETYWDRMQLFQEAILYRFGFVQDKFSASAFNFPSENK
PQYIHVTGTVFLQLPYSKRKYSSGQQRRRRNSTASASQGLFGSEELVGYYWAYNTMLTKA
WRTGVLGDEKLADRLLRDFTDFCANKDKRLVNFWDSCQEKMNASAP
NT seq
4821 nt
NT seq
+upstream
nt +downstream
nt
atgaagaataaaacatacaaacttgtggtgcacaagaaaggatttggaggcagtgatgat
gagcttgtggtgaaccccaaggtgttccctcaagtttcccttggggacataattgagatt
gcacatcccacagatgaatacagccctctcttgctgcaggtgaagagtctcaaagaagac
ctccagaaagagacaatcagtgtggaccagactgtggcgcaagccttcaaactccgggca
taccaggatgtcgtagtaaacattgtggatccaaaggatgtaactctggaccttgtagag
ctcacgttcaaagaccaatacattggaaggggagacatgtggcgactgaagaagagtctg
gtgagtacctgtgcttatgtgacccagaaagtggaatttgcagggatcagagcccaggcc
agtgagttatgggtgaaaggagagaaggtcacctgtggctacatcagtgaagacaccagg
gtggtgttcaggtcgacctctgccatggtgtacatcttcatccagatgagctgcgaaatg
tgggactttgatatctacggggatctctactttgagaaagcagtcagtggttttttgtct
gatctttttgccaaatggaaggagaggtattgcagccatgaagtgacagtggtgcttttc
tcacgcactttctacaacgctaaaaccttggaggagtttcctgagatattgagaggttcc
atcagacaggaccacgagggccgtttctatgaagatttctatagggtagtggctcagact
gagagacgtgatgagtggacctctctactggtcaccatcaagaagcttttcatccagtat
cctgtcttggtgcggctaaaagaagcggttggtttcccctctggccataactctactgct
gctcaggggaattaccttgaggccattaacctgtctttcaacgtctttgacaagcactac
atcaaccgcaactttgaccgcaccggtcagatgtctgtggtcatcaccccgggggtgggc
gtgtttgaagtggaccgactgctcatgatcctaaccaagcagcgcatgattgacaatggt
atcggtgtagacttggtgtgtatgggagagcagccacttcatgcagtgcctctatttaag
ctgcacaacaggacagtgcctggagactcacgactgggggatgactacaacctgccccac
tggatcaaccacagcttttacacatccaaaagccagaactcctgcagctgcttcactcct
cgcatcaagctggcaggacgcaagctccatgcagaaaaattcaagaacaacaaagagcac
actcttggggctccgaaggacgagaacagccttcccatccaggtggactacgatgcccat
gatgcacaggtgttcagactccccgggccgtcccgagcccagaggagcaccaacttcagg
gtggtccgagagagggaagtgagtggaaggagaagctgggggtctgcggatgtgagtggg
gttctagggggcggtgtgtccccccctgtccgctcttgtgggcctgacgagcagcggagc
ctggcctctgatgacagcctgggcagggtgtccaacatcctgctgatccctcgtctgccc
ccagcccagtacggagaagtcagcagctccctgggctacaccagcaccagagagttgttg
gagaagatgatggaatctcagcgggactccagtgctccggggaggttcactgtggggagt
gctgagtccaccctccatgtgcgcccagggggctacacccctcagagggccctcattaac
cccttcgccccctcacgcatgcccatgaagctcacctccaaccgcaggcgctggatgcac
accttccctgtgggtccgtcaggagaggccatccagatccaccaccagaccagacagaac
atggctgaattgcagggcagcgagcagagagaccccgcccacacctccgccgagctcctg
gaactggcctatcatgaggccactggcagacggacagcctcagagagacgacaggcagga
gaaaatgggctgtactccagcggagggatggaggagtatactcatggcagtccagccagc
agcaacagcactggaactccggtaaaccgtggctcctcgttggaggacttttcctctggc
agtccggatccaaccctgctgctgtctgcccccccgacagtgcctagcttctgttgcacg
gtgggggtagactggaagtctctgaccacacccgcctgtctgcctctcaccactgactac
ttccctgaatggcagaccctgcagaacgactacactgagggctgctacgacctgctgcca
cacactgacctggagaggcgggatgatgaggccccggtgatgagtgcccctcaggtgttt
gaggagtttatctgtcagcggctgatgcagggctaccagatcattgtccaacctaacaaa
aggaaaccccagcctgctgtggccccgcccctcagcagtagtccactctacaccagaggg
ctggtctctcggcgcaggccagaagaggaggagagtctgtactggctcagtatgggccgt
accttccataaagtctgcctgaaggataaaatcatcactgttacccgctaccttccgaag
tacccgtatgagtcggcccagatccagtacacctacagtctgtgtccccctcactctgac
gcccacttcctgtcctgctgggtggagtttggtcacgagagactggaggagtacaagtgg
aactacctggaccagtacatctgctctgctggctctgaggacttcagtttgatagactct
ctgaagttctggcggacccgcttcctgctgctgccggccgggggggctagacgtgtggcg
gacggggaggggcactgggacgtttacggggagggagtgggcacggtggcgggcagagag
ggcatgacgggcaccggggactgggccctgctggatggcttcatccgcttcctggaggga
ctcaaccgcatccgcagacgccaccgctctgacaggatcatcaggaaaggaccggcgatg
aagggtttgcaggtgactggtcctctctctgcctaccctccggagcctgtagcgcccccc
cagggcaagaaaggcacctccgctttatcagctctcctggagttggagcagaaccaaaag
actctagaggagcagcaacaacaggggaaaccctcagctgccaccagtgagtcttccact
gccaccatgaccactacatatgtggacagccctcgcaaggatgctgccttcattttggat
tttatacgtagccctcgttcctcctacatctatcacacacaggtttctacagatcctgct
gaaggaggggccacagacaaaggtggtcaggtaggggctggggtggtggcgaccggtggg
gctgcagcccaggcaacaggggatacaggacccagcttagccacagaaaccagtggacag
tctggtactggagccttatgtttgtcctcatcctccaccctgatggaaatactagaggcc
atcaaacaccccacaacaggtgtgcagcttctacctgagcagaagggcctgccccctaac
tgcttcatcagtgctgagatcgtccattggctggtcaacaacgtagagggtgtggccaca
caaggcatggctgtcgacatcatgcagaagatgctggatgagggcctggttacccatgca
tcgggggatgccatgaggacctttgtctatggcttctacttctacaggatagtggcagag
aaagacggtgagcgaggccctacatcccagctgccccctcctgtggcacagggctggtca
acggcagccctggaggactttgccctgtttcagaggaagtggtttgaggtggctttcgtc
ctggaggagcgtcgaacttgtgacctcccggccttccttctgccctggctgcccagccgg
cccgcctcctatgcaagtaggcacagctccttcagccgcagctttggaggacgcagccag
gccgcagcactgctagctgccactgtaccagagcagaagacagccaccttggatgtggac
gttaacaatcgtagtgaccgcactgagtggtgcagctgctattaccatggcaacttctcc
ctcaacgctgccttcgaggtcaagctgcactggatggccgtcactgcagctgttctcttt
gagatggtccaaggctggcacagaaaggctgcctcctgtgggttcctgttggtgcccgtc
ctggaggtgccctttgccctaccctcctacctatatggtgacccgctgcgggcccagctc
ttcatccctctccacatccaccgtctgctgagggacggcagcgacaacctgtttgagggg
tttgaaccagagacgtattgggatagaatgcagctctttcaggaagccatactataccga
ttcggttttgtccaagacaagttttctgcctctgctttcaacttcccgtcagagaacaaa
ccccaatacatccacgtaacaggcacagtgttcctccagctgccctactccaagaggaag
tactctagcgggcagcagcggaggaggaggaattcaacagcatcagccagtcagggcctg
tttggctcagaagagctggtgggttactactgggcctacaataccatgctgaccaaggct
tggaggacgggtgtgcttggggatgagaagctggctgaccgcctgctcagagacttcact
gacttctgcgccaacaaagacaagaggctggtaaacttttgggacagctgccaggagaaa
atgaacgctagtgctccatga
DBGET
integrated database retrieval system
