KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408797
Entry
139408797         CDS       T10872                                 
Name
(RefSeq) helicase POLQ-like
  KO
K19178  POLQ-like helicase [EC:5.6.2.4]
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ocla03400]
    139408797
Enzymes [BR:ocla01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     139408797
DNA repair and recombination proteins [BR:ocla03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   Helicases
    139408797
SSDB
Motif
Pfam: POLQ_helical HTH_61 DEAD Helicase_C ResIII HHH_5 DUF7898 DUF4332 DNA_pol_lambd_f
Other DBs
NCBI-GeneID: 139408797
NCBI-ProteinID: XP_071009232
LinkDB
Position
5:39039913..39048355
AA seq 1031 aa
MSAEIKVKRQSSRKRSRDRRISHLTPARKRTSASGRQCPDNTGQIELSRALDQSMDAKFS
EYCSDPEDLFGDYDSIVSDSSFLAKLDRVGQNMRQHDIEHTTSSRCPVILLAGNPDFTSL
KSSTDNCPKQSCDDSMTESFLEGFTDDAFLDMPSSQLAFLQDPQTAPMNCCTDEDKTSMP
MRHPEKSVSTEDRNENHIAPKARKSVSDHLKRAMMANAATPSSVSRTALQKEAVVTEEIS
VAMQAMESVSMATTDLGPFFGLPTKVKELICNLKGIKDLYEWQKTCLNLDSVQQRRNLIY
SLPTSGGKTLVAEILILKELLCRKKDALFILPYVSLVQEKVRGLASFGLELDFMVEEYAG
SKGRFPPVKGRGKRSLYIATIEKAHGLVNSLIETNRLGNVGLVVVDELHMLGDGSRGAII
EMTLAKVLYISKSTQIIGMSATLGNLQDIQKFLKAESYTNDFRPVELKEYVKLKDSIYEV
DPKEEECFRFSRVLNFKYSSAMQKIDQDHIVALVTEVIPSQSCLVFCPTKKNCENVAGMI
CKYLKEDFIQHKQAEKAVLLGELRSSGNGSLCPVLKKTVPYGLAYHHSGLTSEERKLVEE
AYSAGVLCLLTCTSTLAAGINLPARRVILRSPYVAADFLKRSQYKQMVGRAGRAGIDTHG
ESILILQDKDKVLVKKLLSAPMEICISNLMHSDGKGVLSLILSVIGLNITNSLEQIRDFM
SGTLLSVQEKQVCLERSLWEVTQECVELLKEKGLVTVSTEPQDGSLQVTKLGRATYKGSV
DLTYCDLLYRDLSKGLESLMLNSFLHLIYLVTPYDMVSQCKPDWMVYFRQFTMLSAAEQK
MCAAVGVSESFVARKAAGQNVKKNVDQVVVSRLYLALVLQSLLKETDLWSVADRFQLSRG
FIQTLLSSSSVFCSCVLHFTEELEEFWPFKALLTELTRRLTYCVQAELIPLMEVAGVMER
RAKLLYNAGYKTLAHLANADPNVLAKTVENLFKKQANQIVASAKMLLNEKADALQEEMDD
LLMMPLDLLSL
NT seq 3096 nt   +upstreamnt  +downstreamnt
atgagtgccgaaatcaaagtaaaacgacagtcctcgaggaagcggtccagggatagacga
ataagtcatctcacgcccgcaaggaaaaggaccagtgcttctggacgacaatgtcctgac
aacacgggacagatagagctttccagagctttggaccaatccatggatgcaaagttcagt
gagtactgcagtgaccccgaggacttatttggggactatgacagcattgtaagcgacagc
tctttcctggcaaagctcgatcgagtggggcagaacatgagacagcatgacattgaacat
acaaccagcagcagatgccctgtgattctgcttgctgggaaccctgacttcacttcactg
aagtcttcaacagacaactgtccgaaacaatcatgtgatgactcaatgacagaatcattc
ctggagggcttcacagatgatgctttcctagacatgccaagctcacaactcgcttttcta
caagatccccaaacagcacccatgaactgctgtacagatgaggacaaaacctccatgcct
atgagacatcctgagaagtctgtcagcactgaagatagaaatgagaaccatatcgccccc
aaggcaaggaagagcgtgtccgatcatctgaagagagctatgatggctaatgcagcaact
ccttctagtgtctcccggactgcattgcagaaggaggcagtagttacagaggagatcagt
gttgccatgcaggctatggaatctgtctccatggcgacaacagaccttgggcctttcttt
ggtcttcccaccaaagtgaaggagctgatatgcaatctcaaaggaatcaaagatttatat
gaatggcagaaaacttgtctaaacctggactcagttcagcagaggagaaacctcatctac
tctcttcccaccagtggtgggaagactttggtggctgagattcttatcctcaaagagctt
ctgtgcagaaagaaggatgcccttttcatcctgccttacgtatctctagtgcaggagaag
gttcgagggttggccagttttggcctggagctagacttcatggtggaggagtatgctggt
agtaagggcaggttccctccagtgaagggaaggggcaagaggtccctgtacattgccact
atagagaaggcacacggcctggtaaactctctcatagagaccaacagactgggcaatgtg
gggctggtggttgtggatgagctccacatgttgggtgatggtagcagaggagctatcatt
gagatgactctagccaaagtgctctatatcagtaagtcaactcagatcattggaatgagt
gctactctgggcaatctccaagatatacagaagtttctgaaggcagagagctacactaat
gacttcagaccggttgagctgaaggagtatgtgaaactgaaggacagcatatacgaggtg
gaccccaaggaggaggagtgcttcagattctctcgggtcctgaactttaagtactccagt
gccatgcagaagatcgatcaggatcatattgttgccttggtgactgaggtcattccaagc
cagtcttgccttgttttctgtcccaccaagaagaactgtgagaacgtggctggaatgata
tgcaagtacctgaaagaggactttatccaacacaagcaggcagagaaggctgtgttgctg
ggggagctgaggagcagtgggaatggctccctgtgtccggtgctcaagaagacggtgccg
tacggcctggcttaccaccacagtgggttgaccagtgaagagaggaagctggtggaggag
gcctactctgcaggggttctctgtctcctcacctgcacttctacgctggctgcagggatc
aacctacctgctcggagagtgattctgcgttctccgtacgtggcggcagacttcttgaag
aggagccagtacaagcaaatggtggggagggctggacgggccgggatagacactcatgga
gagagcatcctcattctacaggacaaagacaaagtcttggtcaagaagcttttatccgcg
ccaatggaaatctgcataagcaatctaatgcatagcgacggaaagggtgtcctgagtctc
attctatccgtcattggattaaatatcacgaacagcttagagcagatcagggacttcatg
agtggcacgttgctgtctgtccaggagaaacaggtgtgcttggagaggagcctgtgggag
gtgacacaggagtgtgttgagctgcttaaagagaaaggcctcgtcaccgtttccacagag
ccacaagatgggtccctgcaagtcaccaagctaggaagagctacttacaaaggctcagtg
gatctgacctactgtgacctcctgtatagagacctgtctaaaggcctggagagcctgatg
ctgaacagtttcctccacctcatctacctggtcacaccctatgacatggtctcccagtgt
aagcctgactggatggtctacttcagacagttcacaatgttatcagctgcggagcaaaag
atgtgtgcagcagttggtgtgtctgaaagttttgttgctagaaaggctgctggacagaat
gtcaagaagaatgttgaccaggtggtggtgagtcggctgtacctggccctggtactgcag
tccctgctgaaggagactgacctgtggagcgtggctgacaggttccagctcagccggggc
ttcatccagacactactcagctcttcctcagtattctgctcctgcgtgctgcacttcacc
gaggagctggaagagttctggcccttcaaagctctcctgactgagcttacccgcaggctg
acctactgtgtccaggccgagctcatccctctcatggaggtagcaggagtcatggagaga
agagccaagctgctgtacaatgctggatataagacactggctcatctggccaacgctgac
ccaaacgttctcgccaagactgtggagaacctcttcaagaagcaagctaatcagattgtt
gcttcggcaaaaatgctgctgaatgagaaagctgatgcccttcaggaggagatggatgac
ttattgatgatgcctcttgatctcctctctttgtaa

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