Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408814
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Entry
139408814 CDS
T10872
Name
(RefSeq) very low-density lipoprotein receptor-like isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
139408814
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Gene cluster
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NCBI-GeneID:
139408814
NCBI-ProteinID:
XP_071009259
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Position
5:complement(39871049..39887672)
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AA seq
878 aa
AA seq
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MVTSILGLLILPICLQQCGVIHGSKTECEPSQFQCGNGRCIPSVWQCDGDEDCSDGSDEH
TCVRKTCAEVDFVCRNGQCVPKRWHCDGEPDCEDGSDESVDVCHTRTCRVNEFSCGAGST
QCIPVFWKCDGEKDCDNGEDEINCGNITCAPLEFTCASGRCISRNFVCNGEDDCGDTSDE
QECAPSSCGPSEFQCGNATCIPGSWVCDDDVDCQDQSDESPQRCGRHPTPPAKCSPSETQ
CGSGECIHRKWRCDGDSDCKDGSDEENCPVRTCRPDQFKCEDGTCIHGSRQCNSLRDCAD
GTDEVNCKNLTQCNGPDRFKCRSGECIEMSKVCNKARDCPDWSDEPIKECNLNECLLNNG
GCSHMCRDMVIGYECDCTPGLQLIDRKTCGDIDECMNPGICSQICINLKGGYKCECHNSY
QMDPTTGVCKAVGTEPCLIFTNRRDIRKLGLERREYTQIVEQLRNTVALDADFTQQTLFW
ADLSQRAIFSTVLDKRGDVGSHVKVIDNVQTPVGIAVDWIYKNIYWSDLGTKTIAVANFI
GTKRKVLFDSGLKEPASVAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVETDIQWPN
GITLDLIKSRLYWVDSKLHMLSSVDLNGDNRRKVLQSPGYLAHPFAVTVFEDRVFWTDGE
NEAIYGANKFTGSDVITLASNLNEPQDIIVYHELIQLPGTNWCNEKAQNGGCAYMCLPAP
QINKYSPKYTCVCPKGQTLASNGLHCRPVSPSTPSKDDGKALIRPTDPQVITVPKVVPQP
VPAEANVSTSIREVDSTARGSAAAWVILPVLFLAMAAAGGYLMWRNWQLKNKKSMNFDNP
VYLKTTEDDLNIDISRHSSNIGHTYPAISVVNTEDDLS
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgtctattcttgggctccttatcctaccaatatgtcttcagcagtgtggtgtt
atacacggatcgaagacagaatgtgagcccagtcagttccagtgtgggaatggccgctgc
atcccgtctgtctggcagtgtgacggggatgaggactgctccgacggcagtgacgagcac
acctgtgttcgtaagacctgtgcggaggtggattttgtctgtcgcaatggccaatgcgtc
cccaagagatggcactgcgacggtgagccagactgcgaggatggctctgacgagagcgtg
gatgtttgccacaccaggacctgccgtgtgaatgagtttagctgtggcgccgggtccacc
caatgcatcccggtcttttggaagtgtgatggagagaaggactgcgataacggcgaggat
gaaattaactgcggtaacatcacgtgcgccccgctggagttcacctgtgcgagcggccgc
tgcatctcccgtaactttgtgtgcaacggcgaggacgactgtggcgacacgagtgacgag
caggagtgcgccccgtcgtcctgcggccccagcgagtttcagtgtggcaacgccacctgt
atccctggcagctgggtgtgtgacgacgacgtggattgccaggaccaatcggacgaatcc
cctcagcgctgtggtcgccaccccacgcccccggctaaatgttcacccagcgagacgcag
tgtggctccggggagtgcatccaccgcaagtggcgctgtgacggagactctgactgcaag
gacggcagtgatgaagaaaactgtcctgttcgtacctgcaggccagaccagttcaagtgc
gaggacggcacctgtatccacggcagcagacagtgcaacagcttgcgtgattgtgcagat
ggcaccgacgaagtcaactgcaaaaacttgacgcagtgcaacggccctgacaggttcaag
tgtcggagtggcgagtgtatcgagatgagcaaagtgtgcaacaaggcccgggactgtcct
gactggagcgacgagcccatcaaagagtgcaacctgaacgagtgtctgctgaacaatggc
ggctgctcccacatgtgcagggacatggtgattggctacgagtgtgactgcacccctgga
ctgcagctcatagaccgtaaaacctgcggggacatcgatgagtgtatgaatcctgggatc
tgtagtcagatctgtatcaacctgaagggagggtataagtgcgagtgccacaacagttac
cagatggaccccaccacgggagtgtgcaaggccgtgggcacggagccctgtctgatcttc
actaaccggagggacatccggaagctgggtctggagaggagggagtacacgcagattgtg
gagcagctgcggaacacagtggcactggatgcagacttcacccagcagacgctcttctgg
gctgacctgagccagagggccatcttcagcacggtgttggataagcgaggagatgtagga
agtcatgtgaaggtgatagataacgtccagacaccagtggggatcgccgttgactggatc
tacaagaacatctactggtcagacctcggtaccaagaccatagctgtggccaacttcatc
ggcaccaaacggaaagttctctttgacagcggtttgaaagagcctgcgtccgtcgctgtt
gatccactctctggattcttgtactggtcagattggggtgaaccagctaagattgagaag
tcgggcatgaacggggttgacaggcaggtcctggtcgagactgatattcagtggcccaat
ggcatcaccctggacctgatcaagagtagactgtattgggtggactcaaagttgcacatg
ctctctagtgtcgacctgaacggagacaaccggaggaaagtgctccagtccccaggatac
ctggctcaccccttcgctgtcactgtgtttgaggatcgagtgttttggacagatggggag
aacgaggcaatctacggagcaaacaagttcacaggctctgatgtgattaccctcgcaagc
aatctgaacgagccacaggacatcattgtttaccacgagctaatccagctgcctgggaca
aactggtgcaatgagaaggctcagaacggtggctgtgcctacatgtgcctgccagctcca
cagatcaacaaatactcccccaaatacacgtgcgtgtgtcctaaaggccagacgctcgct
tcaaacggccttcactgtcgaccagtgagcccttctactccctcaaaggatgatgggaaa
gctctaatacgtcccactgacccccaagtgatcacggtgccaaaagttgtcccccaacct
gtccctgctgaagccaacgtcagtacatccatccgtgaggtggactctacagctagagga
tctgcagctgcctgggttatactccctgtgttgttcctggccatggctgctgcaggaggc
tacttgatgtggcgtaactggcagctgaagaataaaaagagcatgaactttgacaatcca
gtgtacctgaaaaccaccgaagacgacctcaacattgatatcagcaggcactcctccaat
ataggccacacctacccagcaatatcagttgtgaatacagaagatgacttgtcataa
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