Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408833
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Entry
139408833 CDS
T10872
Name
(RefSeq) tetratricopeptide repeat protein 28-like
KO
K24936
tetratricopeptide repeat protein 28
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ocla03037
]
139408833
Cilium and associated proteins [BR:
ocla03037
]
Motile cilia and associated proteins
Other motile cilia associated proteins
139408833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_7
TPR_1
CHAT
TTC28_C
TPR_8
TPR_2
TPR_10
TPR_MalT
TPR_16
TPR_17
RPN7
TPR_11
TPR_NPHP3
TPR_BSK1_C
TPR_14
TPR_9
PUB
TPR_19
Motif
Other DBs
NCBI-GeneID:
139408833
NCBI-ProteinID:
XP_071009300
LinkDB
All DBs
Position
5:complement(40338887..40431041)
Genome browser
AA seq
2591 aa
AA seq
DB search
MEKHRPKKERFSLFGPRSSTRATNPPSSSSSSSTSARPIPPPLCQTDPHPCIPPGPTILS
KAEFLEAVRRSNQACQRGQYSLAVQLYGEALSADPQNCILYSNRSAALLHLGQYQTALDD
ALKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSP
LRDSLEPTYHQLQRMKLDKSPFVVVCVIGQELLTAGYHGASVVVLEAGLKIGTCSLKLRG
SVFSALSSAYWSLGNAEKSTGYMQQDLEVAKTLGDQSGECRAHGNLGSAYFSKVNYREAL
TNHRHQLVLAMKLKDREAASAALSSLGHVYTAIADYPNALASHKQCVLLARQTQCPLSEA
RQLGNMGAVYTALGDFTNAMQCHQQHLDIAKTLGNGPEEARAYSNLGSAHHSQRDFDKAV
SYHTLVLQLAQELEDRTIQMRAYAGLGHAARCMQDLERAGQYHQQQLDIAEELQDRAAQG
RASSNLGIIHQMKGEYDAALKLHKAHLCLVQELGDYAAQGRAYGNMGNAYNALRMYDQAV
RYHRQELHISLEVNDRPSQASTHGNLAVAYQALGAHDQALQHYLHHLTIARELRDTQSTA
RALGNLGNFHCCRGEYAPAVPYYQQYLTLSPQLQDLEGEGKVCHNLAYTHYCLGQYREAV
RYYEQDLALAKDLGDKLSQAKAYCNLGLAYKALGEYSKAEDCQRYLLSLAQALNNTQAVF
RALGNLGDVCVCRGDVAGAVRFYQQQLTLAQEVKEHKMEADTYSALGSAHRLLRQYDLAL
SFHQQELSARTALDDQRGQCGALGRLAAVHMALTDYPTAFQCYQAQLTLTQGLRDACVEA
QVQGNMGIAKMNMGVLEEAIGYFEQQLAMLEQLSGAECVLDRGRAYGNLADCYDSLGDFE
EAIKYCEMFLTVAQSLNHVQDQERAYRGLGNAHRSLGSLQQALVCFEKRLVVAHELGGSG
GGEGGSGGRKAQAQAYGELGDLHSQLGNYEQALSCLEHQLNIASTAGDRALEGEASGALG
GVYQLMGENETALQWHQKALEIAEETGSVRSQGRAYGNLGLTYEELGNYERAVACQEQHL
SVAAQNNDLTAKTLAYGSLGRTHHALQNYTQAVMYLQEGLRLAEQCGRREEEARIRHRLG
LSLWASSNLEEAQNQLYRASALFESIRHEAQLSSDYRLTLFDLQTSSYQALQRILVSLGH
YDEALAVAERGRTRAFADLLVERQQGHQPLTSDPYTPTPDPYSPVTVEHILNTVNSQKSL
VLYFSLAAGYLYSWLLAPGTGIVKFHEVYLGEGGAELQASEIQGGGVSGCQTLEQHITAA
REALGVDDYYSSGETESEAGDLLEQQFEERLSSASDPTGYLRMVSRNNLFNRDSRSSSCL
VSSTVSPVSETPSLPCRPPPSPLGKPPLRALHHLLIAPMEGVLMPSSGAVGRHRQLVLVL
EGELYLVPFALLKGSSSNEYLYERFNLLAVPSLGSLGPVAKSYPRRGAPFLYNGGGSMTA
VVGAPRLPSRVMERWLWGPLPSAHDEALRLGELLGCQPLTGTQATKDRVIAAMGQAECVH
FATHVSWKLAALVLSPSQDPGMDSGTRPKESAPCGGSLSSETGNVGARTEQREDGSEDGG
SVCDAESVCDSPPLQEFLLTAADILDLRLPIKLVVLGSYQECVSRVTADGVVGLTRAFLA
AGVQCVCVSLWPVPMAASKVFTHTFYTALLNGTKASAALTEAMKTLQSSTHFSHPSNWAG
FMLIGCDVKLNSPSSLIGQALAEILQYPERARDSLRVLLHLVEKSLQRIQSGQSNAMYTL
QQSVENKVGGVPGWQALLSAVGFRLDCPGNGSGLPAAVFFPMADPGDRLQLCSTTLQSLL
GLPHSAFQALCKLVIAAETGEQLINKLHQVLVQQQTCDKEQDFSLAPIQVSISVQLWRLP
GCHEFLAALGFDLCEAGQEEVLLKTGKQACRRTMHFALQSLLALFDSTELPRRLSLDSSS
SLESLSSSQCASVPLNLPQPPFSPPLGGPDSLSCDAISLYSLSSLASSLSFLSRPEPAGS
DGISQRSRQQELERHRGGVSHRHTGDVSRNRLTNHRGVGRGTEGEDKYEGFSIISSEPLG
GGGRECDTLPFPGGHRHIRGAGRGGAAGRGYPVSISSKGSVSTPTSPLKVLPPPLAIPPS
PNTHVKSQGSQSLSEGQVVSTEAVLSESDQSSTETDSTVKSQEDKPPFTPLDPQELATRI
LEETQSHMQALESLQRGRTGRAGNGGGEKGLRGQECTPSSTLAPLTPTGGGLGFRSSESS
AFSRPSSRASLQARASPLSLSSPLSPLPATLSPISTPLLSTRPKPPSRCSSLQKISSGYN
SPALSSLSSSLSFSHPHPSPSRTPDPHIHAQLRLKYPSSPYTPHISHSPNSISISPSSGH
PSPAGSLLSLATSPALSLAPSPAFSLAPSPALSYSSTGSTASRSSLAETPGLRRLKQAGL
VDERVQAIHNLKTFWSNATQRQEVPGPGRVLRDGGKKMSTVQKDVLGLLHLSPRHGSNNK
NQDTEGPQSPINPLNGHRMLGSKPPEAPPPQTATDSSRGGSPGAPPHPVRLPSGNGFKFP
SPGKFFPSSKC
NT seq
7776 nt
NT seq
+upstream
nt +downstream
nt
atggagaaacatcgaccgaagaaagaaaggttctcactcttcggccctcgctcttctacc
cgagccaccaaccctccttcttcctcctcttcgtcctctacctctgctcgccccatccct
ccccctctctgccagacagaccctcatccttgcatccctcccgggccaacaatcctttct
aaggcagagtttctggaggcagtacgtcgcagtaaccaggcatgccaacgggggcagtac
agcctggcagtgcagctctacggggaggccctgtctgctgaccctcagaactgcatcctg
tacagtaaccgctctgcggcccttctccacctgggacagtaccagaccgccctggacgac
gccctcaaagcccgcctgcttaaccccaaatggcccaaggcatacttccgtcagggtgtg
gccctgcagtaccttggtcgccatgccgacgccctggcagcgtttgcctctggtctagcg
caggaccccaagagtctccaactactggtgggcatggttgaggctgccatgaagtcccca
ctacgagactctctagaacccacctaccatcagctgcagaggatgaagctggacaagagt
ccgttcgtggtggtgtgtgtgattggtcaggagctgctgaccgctggttaccacggcgcc
tcagtggtggtcctggaggcggggctaaagatcggcacatgctctctgaagctccgaggt
tcagtgttctctgctcttagctcagcctactggtcgctaggcaacgcagagaagagcaca
ggatacatgcagcaagacctggaggtggccaagacgctaggtgaccaatcaggcgagtgc
cgagctcacgggaacctaggctctgcctacttctccaaggtcaactacagggaggctttg
accaatcacagacatcagctggtcctcgccatgaaactcaaggacagagaggctgcgtcc
gctgcgctgagcagccttggccatgtgtacacagcgatcgcggactatcccaacgccctg
gccagccataagcagtgtgtgctgttggcacggcagacccagtgcccgctgtcagaggct
cgccagctgggcaatatgggcgctgtctacaccgcactgggagacttcaccaacgctatg
cagtgtcaccagcaacacttggatatagctaagacccttggtaatggtcctgaggaggcg
cgggcgtacagtaacctgggcagtgcccaccacagccagagagactttgacaaggctgtg
tcctaccacaccctggtgctgcagctggctcaggagttggaggacaggactatacagatg
agggcttacgccggcctgggacatgctgctcgctgcatgcaggacttggagagggcaggc
cagtaccaccagcagcagctggacatagcggaggagctgcaggacagagctgcacaggga
cgagcttcatccaacctgggtataatccatcagatgaagggggagtacgatgcagcgttg
aagctccacaaggcccacctgtgtttggtccaggagctgggggactatgctgctcagggc
agggcctatgggaacatgggaaatgcctacaacgctctgaggatgtatgaccaagctgta
cgctaccaccggcaggaactgcacatatcactcgaggtgaatgaccgtccctcccaagcc
tctacccatggtaacctggctgtagcttatcaggcgctgggcgctcacgaccaggctctc
cagcactacctgcaccacctgaccatcgcacgcgagctacgagacacgcagagcacggcc
agggcactaggtaacctgggtaacttccactgctgtagaggggagtatgcccccgcggtt
ccgtactaccagcagtacctgaccctgtcacctcagctacaggacctggagggagagggc
aaggtctgccacaacctggcctacacacactactgcttgggacagtacagggaggccgtc
aggtattatgagcaggacctggccctggctaaagacctgggtgataagttgtcccaggct
aaagcctactgtaacctgggtctggcctacaaagccctgggggaatatagcaaggctgag
gactgtcagagatacctgctgtccctggctcaggctctgaacaacactcaggcagtgttc
cgtgccctgggaaacctgggggatgtgtgtgtgtgtcggggtgacgtggccggggcggtg
aggttctaccagcagcagctcaccctggctcaggaggtcaaagaacacaagatggaggcg
gacacctactcagcgctaggctctgcccacagactcctccgtcagtacgacctggccctg
tccttccaccagcaggagctgtctgcccgcactgctctagacgaccagcgggggcagtgt
ggtgctctgggccgcctggcagccgtccacatggccctgacagactaccccacagccttc
cagtgttaccaggcccagctcaccctgacacagggcctcagagatgcctgtgtggaggca
caggtccagggcaacatgggcatcgccaagatgaacatgggcgtcctggaggaggccatt
gggtattttgagcagcagttggccatgctggagcagctgagtggggctgagtgtgtgctg
gacagaggcagggcctacgggaacctagcagactgttatgactctctgggagactttgag
gaagctataaagtactgtgagatgtttctgactgtggctcagagtctcaaccatgttcag
gaccaggagagagcctacaggggactgggtaacgcacacagatctctaggtagtctccag
caagcgttagtgtgttttgagaagcgtctggtggtggcccatgagctgggcggatcggga
ggtggagagggaggaagtggaggaaggaaggcccaggcccaggcatatggggagctggga
gacctacacagccagctggggaattatgaacaagccctatcctgcctggagcatcaactc
aacatcgcctccaccgcaggggaccgggcactagagggcgaagcgagcggggcgttgggt
ggagtgtaccagctgatgggagagaatgagacagctctacagtggcaccagaaggcatta
gagattgcggaggaaacaggaagtgtgaggagtcaggggagggcctacgggaacctggga
ttgacctatgaggagctgggaaactacgaaagggctgtggcctgtcaggagcagcacctg
agtgtggcagcgcagaataatgacctcacagccaagacactggcgtacggcagcctgggg
aggacacaccatgcgctacagaactacacacaggctgtcatgtacctgcaggaaggtctg
cgtttagcagagcagtgtgggaggagagaggaggaggctaggatccgtcatcgtctgggc
ctgtcactgtgggccagcagcaacctggaggaggcccagaaccagctgtaccgagcgtct
gccttgtttgagtcgattcggcatgaggcccaactcagctcagactacaggctgactctg
tttgacctgcagacatcatcataccaggctctccagaggatcctcgtcagcctgggtcat
tatgacgaggccctagccgtggcagagcggggtcggacccgggcgttcgccgacctcctg
gtggagcgacagcagggtcaccaacccctgacctctgacccttacaccccgacccctgac
ccttactccccggtaaccgtagaacacatcctgaatacggtcaacagtcaaaagtcactg
gtgctgtacttctctctggccgcagggtacctctacagctggctactggcaccaggcaca
ggtatagtgaagttccatgaggtgtacctgggcgagggaggagccgagctgcaggcttca
gagatccaggggggaggagttagtggctgccagactctggagcagcacatcactgcagct
agagaggctctgggagttgacgactactacagcagcggtgagacagagagcgaagcgggt
gatctgttggaacagcagtttgaggaacggctgagctcagccagcgacccgacaggctac
ctacgaatggtttccagaaacaacctcttcaacagggatagtaggagttcttcctgtctg
gtcagttctacagtgtctccagtgagcgagaccccctctctaccctgtagacccccaccc
agccccctcggcaaaccccccctacgagcacttcaccacctgctcattgcacctatggag
ggggtgctgatgcccagtagtggtgcagtgggcagacatagacagctggtgttggtgtta
gagggagagctgtacctggttcccttcgctctgctcaaaggtagctcttctaatgagtac
ctgtatgagaggttcaaccttctagctgtcccatctttagggagcctggggcctgtagct
aagtcctaccctcgtcgcggggctcccttcctctacaacggtgggggttccatgactgca
gtagtaggggctccacgcctgccctccagggtgatggagcgttggctgtggggtccgctg
ccctctgcccacgacgaggccctccgcctgggggaactgctgggctgccagcccctcact
ggaacacaggccaccaaggaccgtgtgatagcagccatgggccaggcagagtgtgttcac
tttgctactcatgtctcctggaagctggcggccctggttctctcccccagccaggatcca
gggatggactcgggaacacggcccaaggagagtgcaccgtgtgggggatcgctttcaagc
gagactgggaatgtgggagcaaggactgagcaacgggaggacgggagcgaggacggagga
agtgtgtgtgatgcagagagtgtgtgtgacagtccaccacttcaggagtttctgctcact
gcagcagacatactggacctgagactgcctatcaaactggtggtgctggggtcgtaccag
gagtgtgttagcagggtgacagctgacggggtggtgggtctgacccgtgccttccttgca
gcgggggtgcagtgtgtgtgtgtgtcactgtggcccgttcccatggcagcctccaaggtg
ttcacacacaccttctacacggcgcttctgaatgggaccaaggccagtgcagctctcact
gaggccatgaagactctacagagcagcacacacttctcacacccttctaactgggcgggc
ttcatgctgattggctgtgatgtgaagctgaacagcccctcgtctctgattggacaggct
ctggcagagatcctccaataccctgagagggctagagactccctgagagtacttttgcac
ctggttgagaagtctctccagcgtatacagagtggtcagagtaatgctatgtacaccttg
cagcagagtgtggagaacaaggttggtggcgtaccgggatggcaggccctgctgtcagcc
gtggggttccggttagattgtcccggtaacggcagcggtctccccgctgctgtcttcttc
cctatggccgaccctggagaccggctgcagctctgcagcaccactctgcagtcactacta
ggtctgcctcattcagcattccaggccctctgtaaactggtcattgctgctgagactgga
gaacagctaatcaacaagctccaccaggtattggttcagcaacagacatgtgacaaggag
caggacttctcgctggctcccatccaggtatccattagtgtccagctgtggagacttcct
ggttgtcatgagttcctggctgcgctgggttttgacctgtgtgaggcaggacaggaggag
gtgctattgaagactggtaaacaggcttgcagacggacaatgcactttgctctgcagtct
ctattggcactgtttgactccacagagctccccagacgcctcagcctggacagctcttca
tctctagagtctctctcctcctcccagtgtgcctccgtcccccttaacctcccccagcct
cccttctcgcccccgcttggcggcccagacagtctctcatgcgacgccatctccctctac
agcctcagctccctcgcctcctctctcagcttcctgtcccgccctgaacccgcaggaagt
gatggcatcagccagcgttcgcggcagcaagaactggagcggcaccgcggaggagtctct
caccgacacacaggagatgtgtcgagaaacagattaacgaatcacagaggagtaggcaga
gggacagagggggaggataagtatgaaggattctctatcatcagcagtgagcctctggga
ggaggggggagggagtgtgacaccttacccttccctgggggacacagacacataagagga
gcagggaggggaggggcggcagggagggggtaccccgtctcgatctcctccaaggggagt
gtcagcactcccacctcaccgctcaaagtcctccccccgcccctggccataccccccagc
cctaacacacacgttaagtcccagggttctcagagcttgtctgaaggtcaggtggtcagt
acagaggcggtcctctcggagtctgaccagtccagtacagagacagacagcaccgtcaag
tcccaggaagacaagccacccttcacccctctggacccccaggagctggccaccaggatc
ctggaagagacccagagccacatgcaggctttggagagcctccagagggggaggacagga
agggcaggcaatgggggaggggagaaggggctaagaggacaagaatgtacaccctcctcc
accttagcccccctgacccccactggaggtggtttgggcttccgttcgtctgaatccagc
gctttcagcagacccagtagtagagccagcctacaggcccgggcttcacctctctccctc
tccagccctctctcacccctccctgccactctctcacccatctccacccctctcctctcc
accaggcccaaacccccctctcgttgctcgtccttacagaagatcagctccggctacaac
agcccggccctatcctccctctcttcctccctctctttctctcacccccacccctcaccc
tccagaaccccagacccccacatccatgcgcagctcagacttaaataccccagctcccct
tacaccccgcacatctcacactcccctaatagcatctccatctcccccagctcaggccac
ccttctccagccggcagcctcctgtccctggccacctccccagccctctccctggccccc
tccccagccttctccctggccccctcccctgccctctcctactcctctacaggctctacc
gcgtcccgctccagcctggctgaaacccctggcctgcgccggttgaaacaggcaggcctg
gtggacgagagggtccaggccatccacaacctgaaaaccttctggtccaatgccacccag
aggcaggaggttcccggcccaggcagagtgctccgagatggggggaagaagatgagcacg
gtccagaaagatgtcctggggcttctccacctctctccaagacatgggtccaacaacaag
aaccaggacactgaggggccccagagccccatcaacccgcttaacggacatcgaatgctg
ggttcaaaaccaccagaggcgcctcctcctcagactgctactgactcctccaggggaggt
agtcctggtgcacccccacaccctgtcagactgccctctgggaatggcttcaagttcccc
tcgcctgggaagttcttcccctcctctaaatgctga
DBGET
integrated database retrieval system
