Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408846
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Entry
139408846 CDS
T10872
Name
(RefSeq) protein strawberry notch homolog 1 isoform X1
KO
K26273
protein strawberry notch
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139408846
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
139408846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
Helicase_C
OspG_kinase
Motif
Other DBs
NCBI-GeneID:
139408846
NCBI-ProteinID:
XP_071009328
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All DBs
Position
5:40804661..40834681
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AA seq
1408 aa
AA seq
DB search
MMDPGQDLLLAALSESGICPNDLFDFDPQDAALPSPTPQSISISALGVGSGMEAMAPPTP
AVSIRHKPQPSTTTFVLNQLNQLPSLGTIVVTKPSTGGTARHTITVTKVVHSAPSALRGS
SSTLTYSTALPSPVSTVVPSNREQIQLKDLLRTGSTMKSSSLVELMRLKPPPDIAQPVAT
ATATGTKIILVSTKMIHKPAELNNGIKKEVSSKDVARIWVNDDMKVRSFSPTLKLPGMEE
EAEEEEDEELGHAETYAEYMPMKLRIGLRHPDPVVETSSLSSVKPPNVWYRMSIPEETVD
RGWLSALQLEAITYAAQQHETFLPNGDRASYLIGDGAGVGKGRTIAGIIYENYLLGRKRS
LWFSVSNDLKYDAERDLKDIGAKNIQVHSLNKFKYGKISSKHNGSVKKGVIFATYSSLIG
ESQSGGKYKTRFKQLLHWCGEDFDGVIVYDECHKAKNVCPIGSSKPTKTGLAVLELQNKL
PKARVVYASATGASEPRNMAYMNRLGIWGEGTPFREFSNFIQAVERRGVGAMEIVAMDMK
LRGMYIARQLSFTGVTFKIEEVPLTTHYIKMYNKSVRLWVAAREKFQAAANLMEAEQRMK
KSMWGQFWSAHQRFFKYLCIASKVRRVVQLAREEVKNGKCVVIGLQSTGEARTLEALEEG
GGELNDFVSTAKGVLQSLIEKHFPAPDRQKLFSLLGIDLSVKKTPSPSEAAAEQKGKKRK
GAEIKKPEKRKRKSGGLSGSSSDDSESEESDKDDAESDDSFKSVSSGEDDDDFNPFKDDS
SEDEEDDPWLSGKRKEAKKGKEKMNKKKKKKKKSIDPDSIHSALLASGLGSIRPAFTTPI
VKTSSTPVIAKVEADDSCMTSQDAVEDAQQMKRDLLDQLEKLAQDLPPNTLDELIDELGG
PDNVAEMTGRKGRVVSNDDGSISYESRSELDVPVEILNLTEKQRFMDGEKNIAIISEAAS
SGISLQADRRVKNQRRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYVFLISELAGEQ
RFASIVAKRLESLGALTHGDRRATETRDLSRFNFDNKYGRNALEIVMKSIVNLDSPLVNP
PSDFEGDFYKEIRHGLIGVGLINVEDRSGILSLDKDYNNIGKFLNRILGMAVQEQNALFQ
YFSDTLAAVIQNAKKNGRYDMGILDLGSGDEKVKKIEAKKFLTPGYSTSGHVELYTVSVE
RGMSWEDATHAWAEQSGPDDGFYVQIRNNKKTAILVQEVNSKKRLFLVYRPNTGKQLKLE
AYTDIKKKCKKVLSDDAKQHWIDQYKSSAEICAHAYWRGNCKKASVGLQCEVGLRCRTYY
VLCGSVLSVWTKVEGVLASVSGTNVKMQIVRLRTEDGQRIVGLIIPANCVSPLTNILSSS
DQSQQLAVQQQQKWQQLHPQSLSHVHNT
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgatggatcctggacaggatttgctcttggcagccctgagcgagagcggaatctgccct
aacgacctgttcgactttgaccctcaggatgctgctcttccctctcccaccccacagtcc
atctccatcagtgccctgggtgttggctcagggatggaggcaatggctccacccacaccc
gcagtctcaatcaggcacaagcctcagccctcaactaccacatttgtcttaaatcaactg
aatcagttgccatcactgggaacaattgttgtgaccaagccctcaactggaggcacggcc
agacacaccatcacagtcactaaggtggtccattcagctccctcagccctgcggggatcc
tcttccacacttacctactccactgctctcccctccccagtctccacagtggttccttcc
aacagagagcagatccagctgaaggacctgttgaggaccggcagcaccatgaagagcagt
agtctggtggaactcatgaggctcaagccaccgccagacatcgcccagccggtcgccacg
gcaacagccacaggcaccaaaattatactggtctcgacaaagatgatccataaaccagcg
gaactgaacaacgggataaagaaggaggtgtcaagtaaagatgtcgctcggatctgggtg
aacgacgacatgaaagtgcggagcttctcacctacactaaaactcccaggaatggaggag
gaggctgaggaagaggaggatgaagagttgggtcatgctgagacatacgctgagtacatg
cctatgaaattgaggatcgggctgcgtcacccagacccagtggtggagaccagctccctg
tccagtgtgaagcctccaaacgtttggtacagaatgtccataccagaggagactgtcgac
cgcggctggctgtctgctctgcagctggaggccatcacatacgctgcccagcaacatgag
acattcctccctaatggcgaccgagcgtcctatctgataggagacggggccggagtaggc
aagggccggaccatcgctgggatcatctacgagaactacctcctcggtagaaagaggtca
ctctggttcagtgtttctaatgacctgaagtatgatgcggagagggatctgaaagacata
ggagccaagaacattcaggtccattcactaaacaagtttaagtatggtaagatctcgtcc
aaacacaatggcagtgtgaagaagggggtgatctttgctacctactcctctctgatcgga
gagagccagtctggagggaagtacaagacccgcttcaaacagctgctccactggtgtgga
gaggactttgacggagtcattgtatatgatgagtgtcacaaagccaaaaatgtctgtccc
atcgggtcatccaaacccaccaagactggactggcagtcctggagctgcagaacaaactg
cccaaggcacgggtggtgtacgctagtgccactggtgcgtctgagccccgtaacatggcc
tacatgaaccggctgggaatctggggagaggggacacctttcagagagttcagcaacttt
atccaggctgtggagcgcagaggtgttggtgccatggagatagttgccatggatatgaag
ctgagggggatgtacattgccaggcagctgagtttcacaggtgtcacgttcaagattgag
gaggttcccttgacaacccactacatcaagatgtacaacaagtctgtacgcctgtgggtg
gctgcgcgggagaagttccaggcggctgctaacctgatggaggcagagcagcggatgaag
aagtccatgtggggtcagttctggtcggcccaccagaggttcttcaagtacctctgcatt
gcctccaaggtccgcagggtggtgcagcttgccagggaggaggtcaaaaacggaaagtgt
gtcgtgattggtcttcagtcgacaggagaggccagaacactggaggccctggaggaagga
ggaggagagctgaacgactttgtttccaccgcaaaaggtgttctgcagtccttgatagag
aagcacttccctgctccagacagacaaaagctgtttagtctgctgggcatcgacctgtcg
gtcaagaagacgccatcgcccagcgaggccgccgcagagcaaaagggcaagaagaggaaa
ggtgctgagataaagaaaccagagaagcggaagagaaagtctggtggtctgtcagggagc
agctctgacgacagcgaatcggaggagtctgataaggatgatgcggagagtgacgacagt
ttcaagtcggtcagctcaggagaagatgatgatgacttcaaccccttcaaggatgattcc
agcgaggatgaggaggatgacccctggctgtctggaaagaggaaagaggcgaagaaaggc
aaggagaagatgaataaaaagaagaaaaagaagaagaagagcattgacccagactctatc
cacagtgccttgttagcctctggtctgggctccatcaggcctgcttttaccacccccata
gtcaagacctccagcacacctgtcatagccaaggtagaggcagatgacagctgtatgacc
agtcaggatgctgtggaagatgctcagcagatgaagagagatctgttggaccagctggag
aagctggctcaggatctaccccccaacactctggatgaactcatagacgagctgggaggg
ccggacaatgtggctgagatgacaggccgtaaaggtcgggtggtcagtaacgacgacggc
agcatctcttacgagtcccgctctgaattggatgttcctgtggagatcctcaacctcaca
gagaaacagaggttcatggacggagagaaaaacatagccatcatctcggaggcggctagc
tccggtatctccctgcaggctgaccggcgggtgaagaaccagaggaggagggtccacatg
accctggagctgccctggagtgcagacagagccatacagcagtttgggagaacccatagg
tctaaccaggtgacagctccagagtacgtgttcctcatctctgagctggctggggaacag
aggtttgcctccattgtggccaagagactggagagcctgggtgccctcacgcatggagac
agaagagcaacagagacgagagatctcagcaggttcaactttgacaacaaatatggcaga
aatgcactggagatcgtgatgaagtctattgtcaacctggactctccgttagtgaatcct
ccttcggacttcgaaggggatttctacaaagagatccgtcatgggttgatcggagtgggt
ctgatcaatgtggaggaccgatcagggattctgtctctggacaaagactacaacaacata
gggaagttcctgaaccgtatcctagggatggcagtgcaggagcagaacgctctgttccag
tacttctctgacactctggcagctgtcatacagaacgccaagaagaacggacgctacgac
atgggcatcctggacctgggttctggggatgagaaggtgaagaagattgaagccaagaag
ttcctgaccccaggctactccacctcaggacatgtggagctctacacggtgagtgtggag
agaggcatgtcctgggaggatgccacccatgcctgggctgagcaaagtggaccagatgat
ggcttctatgtacagataaggaacaacaagaagacagccatcttggtgcaggaggtgaac
agtaagaagaggctgttcctggtctatagacctaatacgggaaaacagcttaaactggaa
gcctacactgacatcaagaagaagtgtaaaaaggtgctctcagatgatgccaaacagcac
tggattgaccagtacaagtcttcagctgagatctgcgctcatgcatactggcgtggtaac
tgtaagaaggcgtcagtgggtctgcagtgtgaggtgggtctgcgctgcaggacgtactat
gtgctgtgtggctctgtgctcagcgtgtggaccaaggtggagggggtcctggcctccgtc
agcggaactaatgtcaagatgcaaatcgtccgcctcagaacagaggacgggcagagaatc
gtgggcctgatcattccagcgaactgcgtctctcctctgaccaacatcctgtcatcatct
gaccagtctcagcaactggctgttcagcagcagcagaagtggcagcagctgcaccctcag
agcctcagccacgtacacaacacatag
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