KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408854
Entry
139408854         CDS       T10872                                 
Name
(RefSeq) protein transport protein Sec31A-like isoform X1
  KO
K14005  protein transport protein SEC31
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    139408854
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ocla04131]
    139408854
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:ocla02044]
    139408854
Membrane trafficking [BR:ocla04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    139408854
Secretion system [BR:ocla02044]
 Sec (secretion) system
  Eukaryotic Sec-SRP protein
   139408854
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40_Prp19 WD40 Beta-prop_RIG_2nd Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 EIF3I Beta-prop_HPS5 TPR_Sec16 WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N Prp18 TPR_GEMI5 SAP_new25
Other DBs
NCBI-GeneID: 139408854
NCBI-ProteinID: XP_071009346
LinkDB
Position
5:complement(41234525..41258875)
AA seq 1629 aa
MKLKEINRTAIQSWSPAQHHPVYLAAGTSAQQLDASFSTSASLEIFELDLAEPSLDMKLR
GAYSSSHRYHKLAWGPHGMDAQGLPSGVLIAGGENGDVILYDPAKIIAGHGDVVIAQSNK
HSGPVRALDVNSFQDNLVASGGNESEIYIWDLNNFGSPMTPGPKTQPLEDISCVAWNRQV
QHILASASPSGRASIWDLRKNDLIIKVSDHSNRMHCSGLEWNPEVATQLVLASEDDRMPV
IQIWDLRFATSPLKVLENHTRGVLAIAWSLADPELLLSCGKDNRILCWNPNTAEVLYELP
TSTQWCFDIQWCPRNPAVLSAAAFDGHISIYSIMGGSSQAFSQTQADTISTSFGNMDPFG
MGQTLPPLQLSQAPPASTTITPLKKPPKWIRRPVGASFAFGGKLVSLENIKPNPQQPQQP
TAHVVHISQVITETTFLERSAQLQATLAAGSFVDFCQEKMDSAQNEFEKTVWSFLKVNFE
NDARGKYLELLGYKKEELAAKIAAALEGEPIQPEEPSTAPAPTSVPEPEADPGPEPEVVP
FPAPQLNTEPEVLPPVPEAATVEPTPEPPLEPALQPEPGPQPELAPPPSGDLSASDPMPV
LQSEPVLTLDLSAEPQLLAPVAPVALLSESDPTLAPPALAPPADLQQAPMFDPTAPFSLQ
PPTEFNQVNSLPVSEFDQVALQHVLEFDPVPLQPVFQFNQVDLQPVSAFNQVDLQAVPGF
DPTSTMPSLQSAVQLDLAPPVSTLQPLADPGLPPEDAFDLIAAANLQPAAEVELSPAPEA
EDPFDLIAATNLQPAAEVELSPAPEAEDPFDLIAATNLQPAAEVELSPAPEAEDPFDLIA
ATNLQPAAEVELTPAPEPEAEDPFDLIAATNLQPAAEVEVTGRLEPLAAEVDLTEALGAE
PIAQEEMPVNEEIPLEEEAAPPAEAEASLPGEAPVPEGIKLRVSQGVDGLITQALLTGDF
HGAVELCLHDNRMADSIILAIAGGAELLEKTQRKYFTKTHSKITKLISAVVMRDWRDVLQ
TCELQNWKEALAAVMTYAQPEEFSSLCDLLGCRLEAVEDCTLQAQACLCYICAGNVEKLV
TCWTRAQDRHCPLSLQDLVEKVVVLRKAVEQNQESDPSAVGLLLGEKMSQYASLLASQGS
LTNAIAYLPQNTEQVAVQQLRDRLSRALGQQAPAAAPVAQLPSPQPTAAQPRQLFTPAQP
SMVTQQPAPAPVPAAATAPQQYYQPVRSASTVTSWSNQTPTALPSVPPPHLGPATTEPQV
QPTPPMYGMPPSGSAAPPASSSAAYPPMYSHQYQPYPPASQYNLGTGGPAIYSPLQYSAP
PPPSFSSSSPQAPAPGFMPQYTQQPLYPPPFMGQPVSSAPPFSPPPLSSGASFQHGGPGS
PASYMPPLPPTGSSEGYNPDTTCFMEGEGPQNGWNDPPTLSRVPKKKKVPENYTPPSPIM
APIFSPLGAGDPQQPPYMPPGQAQNQAPYQGMQQQMAPPPMNPGMLKTRGGSVEGAPGAP
TGDTIQPLQSIPAEKITMKPIPDEHLVLKNTFEGLIHKCLAAATDPQTKRKLDDANKRLE
ALYDKLREQTLSPAIIGGLHNMVQCIESRSYVESLNIHTHIVSSSNFSETSAFMPVLKVV
LTQANKLGV
NT seq 4890 nt   +upstreamnt  +downstreamnt
atgaagctcaaagagatcaaccgcacggccatccagagctggagcccagcacagcaccat
cctgtgtacctggcagcaggtacgtcagcccagcagctggatgcctccttcagtacctcc
gcctctctggagatctttgagctggacctggccgagccttctctggacatgaagctccgt
ggagcatactcctcctctcacagataccacaagctggcgtggggtccccacggcatggat
gcacagggtctcccgtctggagtgctcatcgcagggggagagaacggcgacgtcatcctt
tacgacccggccaagatcattgctggacacggtgacgttgtcatcgctcagagtaacaaa
cacagcgggccagttagagcccttgatgtcaactccttccaggacaacctggtggcttcc
ggaggtaatgaatcagagatctacatctgggacctaaacaactttggctctccgatgaca
ccaggccctaaaactcagcctctagaggacatcagctgtgtggcgtggaacaggcaggtc
caacacatcctggcctcagccagccccagcggccgcgcctccatctgggacctccgcaag
aacgacctaatcatcaaagtcagcgaccacagcaacaggatgcactgctctgggctagaa
tggaaccccgaggtagctactcagctggtgctggcctcggaggatgacaggatgccagtg
atccagatctgggacctgcgttttgccacctcccctctcaaagtcctggagaaccacaca
cggggtgtcctggccatcgcctggagcctggcggaccctgagctgctactgagctgcggg
aaagacaaccgaatcctctgctggaaccccaacaccgccgaggtgctgtatgagctgcct
accagtacccagtggtgctttgacatccagtggtgtcccaggaacccggcggtgctgtcg
gccgcagccttcgacggacacatcagcatctactccatcatggggggcagcagccaggct
ttcagccagacacaggcagacacgatcagcacgtcatttggcaatatggatccatttggg
atgggtcagacccttccccccctgcagctttcccaggccccgcccgcctccaccaccatc
acccccctcaaaaagccccccaagtggatccgcaggcccgtgggggcctccttcgctttt
ggtggtaagctggtgtcgttggagaacatcaagcccaacccccaacagcctcagcagccc
acggcccatgtggttcacattagtcaggtgattacggagacaaccttcctggagcgctct
gcccagctgcaggccacactggctgctggcagcttcgttgacttctgccaggagaagatg
gactcggcccagaacgagtttgagaagacagtctggtccttcctgaaggtgaactttgag
aatgatgctcgtggaaaatacctggagcttttgggatataagaaggaggagctagcagca
aagattgcagcagcattagagggagaacctattcagcctgaggagccctccactgctcct
gcccccacctctgtgcctgaacctgaggctgatcctggaccagaaccagaggtagtgcct
tttcccgctccccagctcaacacggagcctgaggtccttcctcccgtgcctgaggctgct
actgttgagcccacccccgaaccgccgcttgagcccgccctccagcccgaacctggaccc
cagccagagcttgctcccccgcccagcggtgacctttcagcttctgatcctatgcctgtc
ctccaatcggagcctgttcttactcttgacctcagcgcagaaccccagcttcttgcccct
gttgctcccgttgctctcctgtcagagtctgaccctactctggcccccccagctctggcc
cccccagctgacctgcagcaagcacccatgtttgatcccactgcccccttttccctccag
cctccaacagagttcaaccaagtgaactcactgcctgtatctgaatttgaccaggtagct
ttgcagcatgtcttagaatttgacccggtgcccttgcagcctgtatttcagttcaaccaa
gtcgacttacagcctgtttctgcgttcaaccaggtggacttacaggctgtacccggcttc
gacccgacatcaacaatgcccagtctgcagtcggcagtccagctggacctggctcctcct
gtctccaccttgcagcctctagcagaccctggactcccgcctgaagacgcatttgacctc
atcgctgctgcaaacctccagccagcagcagaagtggaactctcacctgctccagaagcg
gaagatccatttgacctcatcgctgctacaaacctccagccagcagcggaagtggaactc
tcacctgctccagaagcggaagatccatttgacctcatcgctgctacaaacctccagcca
gcagcggaagtggaactctcacctgctccagaagcggaagatccatttgacctcatcgct
gctacaaacctccagccagcagcagaagtggaactcacacctgctccggaaccagaagcg
gaagatccatttgacctcatcgctgctacaaacctccagccagcagcagaagtggaagtg
acaggacgtctggaaccattggcagcagaagtagacctgacagaagcccttggagctgag
cccatcgcccaggaagagatgccagtaaatgaagagattcctctggaggaggaggcagct
ccaccagcagaggcagaggccagcctgccaggggaggctccagtcccagagggcattaaa
ctccgcgtcagtcaaggtgtggatggcttgatcacccaggccctgctgacgggtgacttc
catggcgcagtggaactctgtctccatgacaaccgcatggctgacagcatcatcctggcc
atcgctggaggggcggagcttctggagaaaacacagaggaagtacttcaccaagactcac
agcaagatcaccaagctgatcagtgcggtggtgatgagggactggcgtgacgtgctgcag
acctgtgagctgcagaactggaaggaagctctggctgcagtcatgacctacgctcagccc
gaggagttctcctctctgtgtgacctgctgggctgcagactggaggctgtggaggactgc
acgctgcaggctcaggcttgtctgtgttacatctgcgctggcaacgtggagaaactggtg
acctgctggaccagagcacaggacagacactgccctctctctctgcaggatctggtcgag
aaggtggtggtgctccgcaaggcggtagagcagaaccaggagtctgatccctctgctgtg
gggcttctactgggggagaagatgagtcagtatgccagcctgctggcctcccagggcagc
ctcaccaacgccattgcatacctgccccagaacacagagcaggttgcggtgcagcagctg
cgtgaccgtctcagcagagctctgggtcaacaggctccagctgcagccccagtagcccaa
ctcccatcccctcagcccacagctgcccagcccaggcagctcttcacccctgcccagcct
tctatggtgacccagcagcccgctccggcccctgtgcctgccgctgccaccgcaccgcaa
cagtattaccagccggtgaggtctgcctctacagttacctcctggagtaaccaaactccc
acagctctccccagtgtccctcctcctcatctaggccctgccaccacagagccccaggtt
cagccgacaccccccatgtatgggatgcctccctctgggtcagctgctcccccagcctcc
tcgtctgctgcatacccccccatgtactcacatcagtaccagccctaccctccggccagc
cagtacaaccttggcactggtggcccagctatctattcacctctccagtactctgctcct
cctcctccctccttctcttcctcctcaccccaagccccagccccaggcttcatgccccaa
tacacccaacaacccctctacccacctcctttcatgggccagcctgtgtcctccgctcct
cctttctctcctcctccgctgtcatctggagcgtctttccaacatggcggaccgggttcg
cctgcctcgtacatgccgccgctcccaccaaccggatcctcagagggatataatccagac
actacctgtttcatggaaggtgaaggcccacagaatggctggaacgacccgcctaccctg
agcagagtgccaaagaagaagaaggttccagagaactacacgcctccttcccccatcatg
gcccccatcttttctcccctcggtgctggggacccccaacagcccccctacatgcctcca
ggccaggcccagaaccaggccccctaccagggcatgcagcagcagatggcccccccaccc
atgaaccctggcatgctcaagacgcgtggaggaagtgtggagggagcgcccggagccccg
actggagataccatacagccgctgcagtccatccctgctgagaagataaccatgaagccc
atccccgatgagcacctggtcctgaaaaacacatttgagggcctcatccacaagtgcttg
gctgctgccactgatcctcaaaccaagaggaagctggatgacgccaacaaacgccttgag
gccctctacgacaagctacgagagcagaccctctccccagccatcatagggggcctgcac
aacatggtgcagtgcatcgagtctcgatcctacgtggagagcctcaacatccacacacac
atagtgagcagcagcaacttcagcgagacgtctgccttcatgcctgtgctcaaggtggtg
ctgacacaagccaacaaactgggggtctga

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