KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408904
Entry
139408904         CDS       T10872                                 
Name
(RefSeq) roquin-2 isoform X1
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ocla03000]
    139408904
   04121 Ubiquitin system [BR:ocla04121]
    139408904
Transcription factors [BR:ocla03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    139408904
Ubiquitin system [BR:ocla04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    139408904
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-CCCH zf-RING_UBOX zf-RING_2 zf-CCCH_4 zf_CCCH_4 Prok-RING_4 zf-C3HC4 zf-RING_10 zf-RING_4
Other DBs
NCBI-GeneID: 139408904
NCBI-ProteinID: XP_071009446
LinkDB
Position
5:44681935..44703736
AA seq 1099 aa
MPVQAAQWTEFLSCPICYNEFDSNGHKPISLGCSHTVCKTCLHKLHRKACPFDQTAISTD
IDLLPVNCALLQLVGAQVLESQPVTLSSAVELEHYEVCRVCVEELALYLKPISGGKGVVT
LSPSALSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSVG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLIHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNSLRPHLELLANI
DHNPDAASPSWDELEGVVLAVKVMVDGLVEFTQNFSKKSHETPQPQPNSKYKTSMCRDLR
QQGGCPRGSNCTFAHTQDELEKYRMRNKKISGVGRPFPLAQGSMGSEGGDSGEEACAGGL
KGSDKVGSGSLTEGSTHPQLIPRGGNMMEEMKRERSVVNGSNGLTGSSRSSSGSLEQKTV
SPPKTPVNHPSAPSPHGPGSRVECGSGHPKQGHFLMRGPPHQPPPHQPQSSELYYQDPRP
PYDTQPYQPASNYYTSTMHHHKPCMARFLRSSHVLESSLPPSMAPPYSEQHPSFPPPRER
AGPSPYGPPPAPQYGPLAPAHGGYAPLYDSRRMWRPQLYHREDARSNSLPPEVLHSSVYQ
PPLRERYASLDSPYCSAGEHRAALHRDSYGRVPLGYEDLFKRKQEQWTHHHHGNMNRPSQ
SSPVFTVDFGAEHDSGGDQCMNCKYRGEERLAHYSPWSCGTISTCISPFEPEHHNASAHS
CSEHSEVDNGERKRWLHTFEPYRRLKDEDPIIPFGEGPIISKWGAISRASRTGYHTTDPV
QATACQGSNSTTPVDFRDYGPHIGHGDYRWSSCGSDSSSHSSFLESDQLGVCELSARERS
FGSGEKAGAGGLLQTDYCKDTTESEPDRDIELELSALDMEDIDLQDNSQHSEESLELRDP
HLLTLPSSEPQRSQTDKLSADKMEAHLLKKMAFRKSLSPAGLGSGGLSVGKLMMRTGPPR
LGDMGPRPNTGPEMLLNGS
NT seq 3300 nt   +upstreamnt  +downstreamnt
atgccagtgcaggcagcccaatggacagagttcctctcctgtcccatctgctacaatgag
tttgacagcaatggccacaagcccatcagtctgggctgctcgcacaccgtgtgtaagacc
tgtctgcacaagctgcaccgcaaggcctgccccttcgaccagacagccatcagcactgac
attgacctcctgcctgtcaactgtgccctgctacagctggtgggagctcaggtcctggag
tcccagcctgtgactctgagcagtgctgtggagttagagcactatgaggtgtgccgggtg
tgtgtggaggagctggctctctatctcaaacccatcagtggaggaaaaggtgtggtgaca
ctcagtccgagcgcgctcagtcgacccatgcagaggaagctggtgacactggtcaactgc
cagctggtggaagaggaggggcgggtacgtgcggtgcgggcgggccggtcgctaggggaa
cgtaccgtcacagagctcatcctgcagcaccagaacccacagcagctctctgccaacctg
tgggccgccgtcagggcacggggatgccagttcctggggcctgcgatgcaggaggacgct
ctaaagctggtgttgctggccctagaggacggctcagctttgtccaggaaggtactggtg
ctgtttgtggtccagaaactggaggctaggttccctcaggcctccaagacctccgtcgga
cacgtggtccagctgctctacagagcctcctgctttaaggtgaccaagcgtgacgaggac
tcgtcgctgatgcagctaaaggaggagttccgtacctacgaggccctgcgccgcgagcac
gacgcccagatcgtgcacatcgccatggaggcggggctccgtatctcacctgagcagtgg
tcctccctgctctacggagacctcatccacaagtcacacatgcagtctatcattgacaag
ctccagtccccagagtcctttgcaaagagtgtccaggagctgacgatagttctacagaga
acaggagaccctgccaacctgaacagcctcagaccacacctggaactactggccaacatc
gaccacaacccagacgcggcgtctccgtcgtgggacgagctggagggcgtggtgctggcg
gtgaaggtgatggtcgacggcctggtggagttcacacagaacttcagtaagaagagccac
gagacaccacagccgcagcccaacagcaagtacaagaccagtatgtgtcgagacctccgg
cagcagggtggctgtccccgaggatccaactgcaccttcgcacacacacaggacgagcta
gagaaatacagaatgagaaacaagaagatcagtggcgtgggccggcccttccccctagcc
caggggagtatgggtagtgaggggggcgactcaggagaggaggcctgcgctgggggacta
aagggctcagacaaggtgggatcggggtccctaacagaggggtccacacacccccagctc
atcccgaggggaggcaacatgatggaggagatgaagagggagaggtctgttgttaacgga
tccaacggactcacaggctccagccgctcctcatctggctccttggaacaaaagacagtt
tctcctccaaagacacctgtcaaccacccctcagctccttctccccatggtccggggtct
agggtagaatgtggctctggtcatcccaaacaagggcacttcctaatgagaggaccccct
caccagcctcctccccaccagcctcagtcctctgaactgtactaccaggacccccgacct
ccctacgacacacaaccctaccagccagccagtaactactacacctctacaatgcaccac
cacaaaccctgcatggcccgcttcctgcgttccagccacgtcctcgagtcctctctgccg
ccttccatggcccctccgtactccgagcagcacccatcctttcccccaccacgggagcgc
gcgggtccttctccctacggccccccgccggccccccagtacgggcccctggccccggcc
catggtggctacgctcccctgtatgacagtcggcgtatgtggagaccccagctgtaccac
cgcgaggacgccaggagtaactccctgcctccagaggtgctgcactcctctgtgtaccag
ccccccctccgagagagatacgcctccctggacagtccctactgctcggcgggggagcac
agagcagcgctgcacagggactcttatgggcgtgttcctcttggatatgaggatctgttc
aagcggaaacaggagcaatggacacaccatcaccacggcaacatgaacaggccctcccag
tcctcccccgtcttcaccgtagactttggtgcagagcatgacagtggaggtgatcagtgt
atgaactgtaagtaccgtggtgaggagcgtctggcccactactctccctggtcctgtgga
accatcagtacctgcatcagcccctttgaaccagagcatcacaacgcctcagctcactcc
tgctccgaacactcagaagtagataatggtgaaaggaaacggtggctccacacatttgag
ccgtaccgtcgtctgaaagacgaggatcccatcatcccatttggagagggacccatcatc
tcgaaatggggggctatctcccgcgcctcccgtacagggtaccacaccacggaccccgtc
caggccacagcctgccagggaagcaacagcaccacccccgtcgacttcagagattatggc
ccacacatcggtcacggtgactacaggtggagctcctgtgggtctgactcgtccagccac
tctagtttcctagagagtgaccagctgggagtgtgtgagctttctgcccgtgagcggtcc
ttcggcagtggagagaaggctggtgcaggcggcctgctgcagactgactactgtaaggac
acgacagagagcgaaccggacagagacattgagctggagctgtctgcacttgacatggag
gacattgacctgcaggacaacagtcaacactctgaggagtcccttgagctaagggacccc
cacctcctcacccttcccagcagtgaaccccagaggagccagacggacaagctgtccgct
gacaagatggaggctcacctgctgaagaagatggccttcaggaagtctctctcccctgca
ggtctgggctcgggaggcctcagtgtggggaagctgatgatgagaaccggccctccaagg
cttggggacatgggccctcgccccaacacaggccctgagatgctgctcaatggcagttga

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