Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408906
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Entry
139408906 CDS
T10872
Name
(RefSeq) spermatid perinuclear RNA-binding protein-like isoform X1
KO
K13200
spermatid perinuclear RNA-binding protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139408906
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
139408906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DZF_C
DZF_N
dsrm
Dicer_dsRBD
SGP
Motif
Other DBs
NCBI-GeneID:
139408906
NCBI-ProteinID:
XP_071009452
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All DBs
Position
5:complement(44844534..44992993)
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AA seq
720 aa
AA seq
DB search
MRSFRSFGNDDRHVMAKHSTIYPSSSELEAVQTLVSTVEGALKHVSDWIDQSNVQSVQSN
SQADAAAGQTDGQPNPTDSTMTEDGSADHDDDLNDDPDVSPSASPDDCTDSSSREPGGGV
LCGVMRIGLVAKGLLIKQDMDLELVLMCREKPTDALLCTVCDNLPLQIQKLTEDKYEVQR
CVPEAAILVCSTTEPKLTLKVTLTSPQMREDSDTDEQVEGVELTDPADMLDRHRCLVALA
ALRHAKWFQARVNGLKSCVIILRILRDMCNRRPAWEPLKGWPLELICEKAIATCNRPLGA
GEALRRVMECLASGILLPGGPGLHDPCEKELTNTLTAMTDEEAEAITYSAQHALRLMAFG
HIYKVLEMDPLPSSKPSQKYPWSDREGSGLKRPYEDGPTDDKDLIKKMKRNLRKVLDSKA
IDTNQPMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDLDSTVYEASGSSKKTAKLH
VAVKVLQAMGYPTGFDADLDCSADEKSDGEGKSESSTHSSNNTAHSDNSNTLEVRTQGPI
LTASGKNPVMELNEKRRGLKYELISESGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASA
ALAALEKLFSGPNAAAANNKKKKIIPQHATKGALAAAAASAVAAQVARGRGRAAALTRGA
FVSAAAPGYTQIPGFGTPYGYSAAAAPAYGGLFIDNPFYQPRTIAPFIIHLGPQDLFSDF
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaggtccttccgttcgttcggtaatgatgaccgtcacgtcatggccaaacactccacc
atctacccatcgtcgtctgaactggaggcggtccagaccctggtgtccaccgtggagggt
gccctcaaacacgtctctgattggatagaccagagcaatgtccaatcggtgcagagtaac
agccaggcagacgcagcagccggccagacagacggccagccgaaccccacagacagcaca
atgacagaggacggtagtgctgaccatgacgacgaccttaacgacgaccccgacgttagt
cccagcgccagcccagatgactgcacagacagcagcagcagggagcccggtggaggtgtg
ctgtgtggggtgatgaggatcggcctggtggctaaagggctgctcatcaaacaggacatg
gatctggagctggtgctgatgtgtagagagaaacccactgatgcactgctgtgcactgtc
tgtgacaacctgcccctgcagatacaaaagttaaccgaagacaagtatgaggtgcaacgc
tgtgtgccagaggcagccatcttggtgtgtagtacgacagagccaaaactcaccctgaag
gtcaccctcacctccccgcagatgagagaggacagcgacacggacgaacaagtggagggt
gttgagctgacagacccggcagacatgctggacaggcacagatgcctggtggccctggcg
gctctgcgacatgccaaatggttccaggccagagtaaatgggttgaagtcgtgtgtcatc
atcctcaggatcctgagagacatgtgcaatagacgaccagcctgggagccgctgaaagga
tggcccctggagctgatctgtgagaaggccatagccacgtgtaaccggccgcttggtgca
ggggaggccctccgtcgggtcatggagtgtctcgcctcaggaatcctccttccaggagga
ccagggttacacgacccgtgcgagaaggagctgaccaacaccctaacggccatgacagac
gaggaggcagaggccatcacatacagcgcacagcacgctctgagactgatggcgttcggt
cacatctacaaggtgctggagatggaccctctcccctctagtaaaccctcccagaagtac
ccctggtcagacagggagggctcagggctgaagaggccctacgaggatgggcccacggac
gacaaagacctcatcaagaagatgaagaggaacctgaggaaagtcctcgacagcaaagca
atagacaccaaccaaccaatgaatgctctgatgcgtctgaatcagatacgtccaggtctg
cagtacaagctgctgtcccagtccggcccggtccacgctcctgtcttcaccatgtctgta
gacctagacagcaccgtctacgaagcctcgggctcctccaagaagaccgccaagctgcat
gtcgctgtcaaggttctgcaggcgatgggttaccccacagggttcgatgcagacctggat
tgcagtgcagatgagaagtcggacggagaggggaagagcgaatcatctacacactcaagc
aataacacagcacactcagacaactcaaatacactggaggtccgaactcagggtcctatt
ctgacggccagtggtaagaaccccgtcatggagctgaacgagaagcgcaggggtctgaag
tacgagctcatatcagagagcgggggcagccatgacaaacgcttcgtcatggaggtggag
gtggatggccagaagttccgcggggcggggcctaataagaaggtggcgaaggcttcggct
gcgttggctgctctggagaaactcttctctggccccaacgccgccgccgccaacaacaag
aagaagaagatcatcccacaacatgccactaaaggagccctagctgcagcggcagcctca
gcagtagcagcccaggtggccagagggagaggtcgagcggcggccctgaccagaggagcc
ttcgtcagcgctgccgcaccagggtacacacagataccaggcttcgggactccatatgga
tacagtgccgcagccgccccagcctacggtggtcttttcattgacaatcctttttaccag
cctcggaccatcgcaccatttattattcatttgggtcctcaagatctcttctctgacttc
tag
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