Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408929
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Entry
139408929 CDS
T10872
Name
(RefSeq) UV excision repair protein RAD23 homolog B-like
KO
K10839
UV excision repair protein RAD23
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03420
Nucleotide excision repair
ocla04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
139408929
09124 Replication and repair
03420 Nucleotide excision repair
139408929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
ocla03051
]
139408929
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139408929
Proteasome [BR:
ocla03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
139408929
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
139408929
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Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
Crinkler
Rad60-SLD_2
Dsc3_N
Ubiquitin_5
Ubiquitin_4
CUE
Motif
Other DBs
NCBI-GeneID:
139408929
NCBI-ProteinID:
XP_071009498
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Position
5:46413544..46435297
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AA seq
389 aa
AA seq
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MQITLKTLQQQTFKIDIDAEETVKTLKEKIENEKGKDGFPVAGQKLIYAGKILNDDTALK
EYKIDEKNFVVVMVAKPKAAPAAAQPSSATTTTTSSTTVPTVPAAALSGSDNPPEGGKPE
DKPAEERPSNTSAPASTPTSSSGLLANVNMFEEATSALVTGQSYENMVTEMMLMGYEREQ
VVASLRASFNNPDRAVEYLLTGIPAGEEGHVSADPVVPPVGGGTPALNTGSMTTPASTGS
LASAATGANPLGFLVNQPQFLQMRQIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFI
QMLNEPAQEGGQGGGGVGGGGGGGVGVGVGGEAGSGMNYIQVTPQEKEAIERLKALGFPE
GLVIQAYFACEKNENLAANFLLQQNFDDD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgcagataacattaaaaactctccaacagcagacatttaaaatcgacatagacgcagag
gagacggtaaaaaccttaaaggaaaaaattgagaatgagaagggaaaagatggttttcca
gttgctggacaaaagttgatatatgcagggaaaatcctaaatgatgacacagccctcaag
gagtataagattgatgagaagaactttgtggtcgtcatggtggcaaagcctaaagcagcc
ccagcagctgcccagccttccagtgctaccacgaccaccacctccagcactacagtcccc
acagtacccgctgctgccttgtcaggctcagataacccacccgaggggggcaaaccagag
gacaaaccagctgaggagaggccctccaacacctcagccccagcatcaactccaaccagt
tcgtctggtctcttggccaatgtgaacatgttcgaggaggcaacttctgctctagtgaca
ggccaatcatatgagaacatggtgaccgagatgatgctgatgggctatgagagggagcag
gtggtggcatcactccgagccagcttcaacaacccagacagagctgtggagtacctgctt
acagggatcccagctggggaggagggccatgtgagtgctgacccagtggtgccccctgtg
ggtggaggaactccagctctgaacacaggcagtatgaccaccccagccagcacaggctcc
ctagccagcgctgcaacaggagccaaccctctggggttcctggttaaccagccccagttt
ctccagatgagacagatcatccagcagaacccctctctgctccctgccttactacagcag
atagggagggagaacccccagcttctgcaacaaatcagcagccaccaagagcagttcatc
cagatgctgaacgagccagcccaggaggggggtcagggaggaggaggagtaggtggtggt
ggaggaggaggtgttggagtgggggtcggtggggaggctggaagtggcatgaactatatt
caggtcacaccccaggagaaggaggccattgagaggctaaaagccctaggattccctgaa
ggacttgttatacaggcctactttgcctgtgagaagaatgagaacttggccgctaacttc
ctcttacaacagaattttgacgatgactaa
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